Variant report

Variant	rs13069082
Chromosome Location	chr3:146270768-146270769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:146260480..146262748-chr3:146268445..146271020,2	K562	blood:
2	chr3:146245158..146247754-chr3:146270114..146271992,2	K562	blood:
3	chr3:146262497..146265789-chr3:146267406..146270879,3	MCF-7	breast:
4	chr3:146261061..146263608-chr3:146270616..146272479,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188313	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1057481	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1061307	0.89[CHB][hapmap]
rs1079369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13064509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13074501	0.84[CEU][hapmap];0.80[GIH][hapmap]
rs13080178	0.89[CHB][hapmap]
rs13099587	0.89[CHB][hapmap]
rs1373246	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1443827	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16858420	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1882971	0.86[ASN][1000 genomes]
rs1882972	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1882973	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1882974	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1997601	0.87[ASN][1000 genomes]
rs1997604	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2120381	0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs2165948	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2587007	0.87[ASN][1000 genomes]
rs2587008	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2587009	0.87[ASN][1000 genomes]
rs2587010	0.86[ASN][1000 genomes]
rs2587011	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2587012	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2587013	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2587014	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2587015	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2587016	0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs2587017	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2587018	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2587021	0.82[JPT][hapmap]
rs2587023	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2587024	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2609858	0.94[ASN][1000 genomes]
rs2609860	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2609861	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2609862	0.86[ASN][1000 genomes]
rs2609864	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2609865	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2609866	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2609867	0.86[ASN][1000 genomes]
rs2688688	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2738905	0.85[ASN][1000 genomes]
rs2738906	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2738907	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2738910	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2738911	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2738912	0.87[ASN][1000 genomes]
rs2738915	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2738916	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2738918	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2738920	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2738921	0.82[JPT][hapmap]
rs2738923	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs35214899	0.93[ASN][1000 genomes]
rs35309521	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3773510	0.86[ASN][1000 genomes]
rs67703040	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6799809	0.89[CHB][hapmap]
rs7615988	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7625713	0.89[CHB][hapmap]
rs9289722	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs977758	0.95[ASN][1000 genomes]
rs9832220	0.83[CEU][hapmap]
rs9833135	0.80[CEU][hapmap]
rs9850802	0.89[CHB][hapmap]
rs9861142	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9865918	0.98[ASN][1000 genomes]
rs9876886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014493	chr3:146255594-146288414	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146263200-146270800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:146263800-146271800	Weak transcription	K562	blood
3	chr3:146267200-146271600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr3:146267800-146272000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:146268200-146270800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:146268200-146271200	Weak transcription	Primary B cells from cord blood	blood
7	chr3:146268200-146272200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:146268400-146270800	Enhancers	NHDF-Ad	bronchial
9	chr3:146268600-146271600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:146268800-146272400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:146269000-146272000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:146269200-146271400	Weak transcription	Dnd41	blood
13	chr3:146269200-146271800	Weak transcription	A549	lung
14	chr3:146269200-146273200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:146269400-146271000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr3:146269400-146271200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr3:146269400-146272000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr3:146269600-146271600	Weak transcription	GM12878-XiMat	blood
19	chr3:146270000-146284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:146270200-146274200	Weak transcription	HMEC	breast

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