Variant report

Variant	rs35309521
Chromosome Location	chr3:146282286-146282287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1079369	0.85[ASN][1000 genomes]
rs13064509	0.83[ASN][1000 genomes]
rs13069082	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1373246	0.80[ASN][1000 genomes]
rs1443827	0.90[ASN][1000 genomes]
rs1882971	0.80[ASN][1000 genomes]
rs1882972	0.80[ASN][1000 genomes]
rs1882973	0.80[ASN][1000 genomes]
rs1882974	0.80[ASN][1000 genomes]
rs1997601	0.81[ASN][1000 genomes]
rs1997604	0.81[ASN][1000 genomes]
rs2120381	0.80[ASN][1000 genomes]
rs2165948	0.80[ASN][1000 genomes]
rs2587007	0.81[ASN][1000 genomes]
rs2587008	0.81[ASN][1000 genomes]
rs2587009	0.81[ASN][1000 genomes]
rs2587010	0.80[ASN][1000 genomes]
rs2587011	0.80[ASN][1000 genomes]
rs2587012	0.80[ASN][1000 genomes]
rs2587013	0.80[ASN][1000 genomes]
rs2587014	0.80[ASN][1000 genomes]
rs2587015	0.80[ASN][1000 genomes]
rs2587016	0.80[ASN][1000 genomes]
rs2587017	0.80[ASN][1000 genomes]
rs2587018	0.80[ASN][1000 genomes]
rs2609858	0.84[ASN][1000 genomes]
rs2609860	0.81[ASN][1000 genomes]
rs2609861	0.81[ASN][1000 genomes]
rs2609862	0.80[ASN][1000 genomes]
rs2609864	0.80[ASN][1000 genomes]
rs2609865	0.80[ASN][1000 genomes]
rs2609866	0.80[ASN][1000 genomes]
rs2609867	0.80[ASN][1000 genomes]
rs2738906	0.81[ASN][1000 genomes]
rs2738907	0.81[ASN][1000 genomes]
rs2738910	0.80[ASN][1000 genomes]
rs2738911	0.81[ASN][1000 genomes]
rs2738912	0.81[ASN][1000 genomes]
rs2738916	0.80[ASN][1000 genomes]
rs2738918	0.80[ASN][1000 genomes]
rs2738920	0.80[ASN][1000 genomes]
rs2738923	0.80[ASN][1000 genomes]
rs35214899	0.83[ASN][1000 genomes]
rs3773510	0.80[ASN][1000 genomes]
rs67703040	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7615988	0.87[ASN][1000 genomes]
rs9289722	0.80[ASN][1000 genomes]
rs977758	0.90[ASN][1000 genomes]
rs9861142	0.87[ASN][1000 genomes]
rs9865918	0.87[ASN][1000 genomes]
rs9876886	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014493	chr3:146255594-146288414	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
2	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv877623	chr3:146278616-146319368	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146270000-146284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:146275800-146286200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:146280200-146283800	Weak transcription	NHEK	skin

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