Variant report

Variant	rs9865918
Chromosome Location	chr3:146272461-146272462
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:146271238..146272788-chr3:146273946..146275885,2	K562	blood:
2	chr3:146259917..146263549-chr3:146271246..146274873,4	MCF-7	breast:
3	chr3:146053792..146056507-chr3:146270955..146273271,2	K562	blood:
4	chr3:146261061..146263608-chr3:146270616..146272479,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188313	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1057481	0.86[ASN][1000 genomes]
rs1079369	0.98[ASN][1000 genomes]
rs13064509	0.95[ASN][1000 genomes]
rs13069082	0.98[ASN][1000 genomes]
rs13074501	0.88[EUR][1000 genomes]
rs1373246	0.88[ASN][1000 genomes]
rs1443827	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1546420	0.90[EUR][1000 genomes]
rs1546421	0.90[EUR][1000 genomes]
rs1579786	0.88[EUR][1000 genomes]
rs1579787	0.88[EUR][1000 genomes]
rs1882971	0.88[ASN][1000 genomes]
rs1882972	0.88[ASN][1000 genomes]
rs1882973	0.88[ASN][1000 genomes]
rs1882974	0.88[ASN][1000 genomes]
rs1997601	0.90[ASN][1000 genomes]
rs1997604	0.90[ASN][1000 genomes]
rs2120381	0.88[ASN][1000 genomes]
rs2165948	0.88[ASN][1000 genomes]
rs2587007	0.90[ASN][1000 genomes]
rs2587008	0.90[ASN][1000 genomes]
rs2587009	0.90[ASN][1000 genomes]
rs2587010	0.88[ASN][1000 genomes]
rs2587011	0.88[ASN][1000 genomes]
rs2587012	0.88[ASN][1000 genomes]
rs2587013	0.88[ASN][1000 genomes]
rs2587014	0.88[ASN][1000 genomes]
rs2587015	0.88[ASN][1000 genomes]
rs2587016	0.88[ASN][1000 genomes]
rs2587017	0.88[ASN][1000 genomes]
rs2587018	0.88[ASN][1000 genomes]
rs2587023	0.87[ASN][1000 genomes]
rs2587024	0.87[ASN][1000 genomes]
rs2609858	0.96[ASN][1000 genomes]
rs2609860	0.90[ASN][1000 genomes]
rs2609861	0.90[ASN][1000 genomes]
rs2609862	0.88[ASN][1000 genomes]
rs2609864	0.88[ASN][1000 genomes]
rs2609865	0.88[ASN][1000 genomes]
rs2609866	0.88[ASN][1000 genomes]
rs2609867	0.88[ASN][1000 genomes]
rs2688688	0.87[ASN][1000 genomes]
rs2738905	0.87[ASN][1000 genomes]
rs2738906	0.90[ASN][1000 genomes]
rs2738907	0.90[ASN][1000 genomes]
rs2738910	0.88[ASN][1000 genomes]
rs2738911	0.90[ASN][1000 genomes]
rs2738912	0.90[ASN][1000 genomes]
rs2738915	0.87[ASN][1000 genomes]
rs2738916	0.88[ASN][1000 genomes]
rs2738918	0.88[ASN][1000 genomes]
rs2738920	0.88[ASN][1000 genomes]
rs2738923	0.88[ASN][1000 genomes]
rs34682680	0.83[EUR][1000 genomes]
rs35046242	0.90[EUR][1000 genomes]
rs35214899	0.95[ASN][1000 genomes]
rs35309521	0.87[ASN][1000 genomes]
rs35416584	0.88[EUR][1000 genomes]
rs3773510	0.88[ASN][1000 genomes]
rs67703040	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7615988	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289722	0.88[ASN][1000 genomes]
rs977757	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs977758	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs977759	0.90[EUR][1000 genomes]
rs9810169	0.88[EUR][1000 genomes]
rs9832220	0.90[EUR][1000 genomes]
rs9833135	0.90[EUR][1000 genomes]
rs9861142	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876886	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014493	chr3:146255594-146288414	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
2	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146269200-146273200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:146270000-146284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:146270200-146274200	Weak transcription	HMEC	breast
4	chr3:146271200-146272600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:146271600-146272600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr3:146271600-146272600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:146271800-146272600	Enhancers	K562	blood
8	chr3:146271800-146272800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:146272000-146272600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:146272200-146272600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:146272200-146272600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr3:146272200-146275600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:146272400-146273200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:146272400-146275600	Weak transcription	Primary B cells from cord blood	blood

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