Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10510566	0.81[EUR][1000 genomes]
rs10510567	0.81[EUR][1000 genomes]
rs1108138	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11712065	0.81[EUR][1000 genomes]
rs12490801	0.81[AMR][1000 genomes]
rs12496273	0.81[EUR][1000 genomes]
rs12496365	0.81[EUR][1000 genomes]
rs12497123	0.81[EUR][1000 genomes]
rs13080165	0.81[EUR][1000 genomes]
rs13088742	0.81[AMR][1000 genomes]
rs13093379	0.81[EUR][1000 genomes]
rs13094358	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1483831	0.80[EUR][1000 genomes]
rs17523645	0.85[AMR][1000 genomes]
rs17588729	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34015957	0.81[EUR][1000 genomes]
rs35569984	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35946440	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36013124	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4681019	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61694119	0.81[EUR][1000 genomes]
rs62235603	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72619935	0.85[ASN][1000 genomes]
rs9835390	0.86[ASN][1000 genomes]
rs9835396	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25412400-25416000	Weak transcription	Fetal Intestine Large	intestine
2	chr3:25413200-25415000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:25413400-25415000	Enhancers	NHDF-Ad	bronchial
4	chr3:25413800-25414800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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