Variant report
| Variant | rs62235603 |
|---|---|
| Chromosome Location | chr3:25401174-25401175 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TOP2B-5 | chr3:25401141-25401413 | ucscGeneNc_uc003cdf_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10510563 | 0.85[EUR][1000 genomes] |
| rs10510566 | 0.88[EUR][1000 genomes] |
| rs10510567 | 0.88[EUR][1000 genomes] |
| rs1108138 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11712065 | 0.88[EUR][1000 genomes] |
| rs12496273 | 0.88[EUR][1000 genomes] |
| rs12496365 | 0.88[EUR][1000 genomes] |
| rs12497123 | 0.88[EUR][1000 genomes] |
| rs13070614 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs13080165 | 0.88[EUR][1000 genomes] |
| rs13093379 | 0.88[EUR][1000 genomes] |
| rs13094358 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs13325064 | 0.86[ASN][1000 genomes] |
| rs1384899 | 0.85[ASN][1000 genomes] |
| rs1483831 | 0.88[EUR][1000 genomes] |
| rs1483842 | 0.84[ASN][1000 genomes] |
| rs1531871 | 0.84[ASN][1000 genomes] |
| rs17588729 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs322684 | 0.81[EUR][1000 genomes] |
| rs34015957 | 0.88[EUR][1000 genomes] |
| rs35569984 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs35946440 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4681019 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61694119 | 0.88[EUR][1000 genomes] |
| rs72619935 | 0.99[ASN][1000 genomes] |
| rs8180044 | 0.86[ASN][1000 genomes] |
| rs9835390 | 1.00[ASN][1000 genomes] |
| rs9835396 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949035 | chr3:25194301-26084890 | Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 68 gene(s) | inside rSNPs | diseases |
| 2 | nsv834645 | chr3:25363723-25555107 | Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
