Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:25402908..25405265-chr3:25407637..25410309,2	K562	blood:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1016786	0.86[AFR][1000 genomes]
rs1016787	0.86[AFR][1000 genomes]
rs1108138	0.80[ASN][1000 genomes]
rs13094358	0.92[ASN][1000 genomes]
rs1351782	0.93[AFR][1000 genomes]
rs1351785	0.91[AFR][1000 genomes]
rs1384899	0.96[ASN][1000 genomes]
rs1473452	0.93[AFR][1000 genomes]
rs1483842	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1531871	0.95[ASN][1000 genomes]
rs17588729	0.91[ASN][1000 genomes]
rs1809485	0.81[AFR][1000 genomes]
rs35569984	0.91[ASN][1000 genomes]
rs35946440	0.92[ASN][1000 genomes]
rs4681019	0.92[ASN][1000 genomes]
rs62235603	0.86[ASN][1000 genomes]
rs6769856	0.82[AFR][1000 genomes]
rs72619935	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7623744	0.87[AFR][1000 genomes]
rs7648812	0.93[AFR][1000 genomes]
rs8179975	0.93[AFR][1000 genomes]
rs8180044	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs900656	0.81[AFR][1000 genomes]
rs900657	0.81[AFR][1000 genomes]
rs900658	0.81[AFR][1000 genomes]
rs922942	0.93[AFR][1000 genomes]
rs922943	0.93[AFR][1000 genomes]
rs9310778	0.86[AFR][1000 genomes]
rs9310779	0.93[AFR][1000 genomes]
rs9835390	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9835396	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9835679	0.90[AFR][1000 genomes]
rs9880591	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25403600-25404200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:25403600-25404200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:25404000-25404400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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