Variant report

Variant	rs72619935
Chromosome Location	chr2:63786760-63786761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1016786	0.82[AFR][1000 genomes]
rs1016787	0.82[AFR][1000 genomes]
rs1108138	0.86[ASN][1000 genomes]
rs13070614	0.85[ASN][1000 genomes]
rs13325064	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1351782	0.89[AFR][1000 genomes]
rs1351785	0.87[AFR][1000 genomes]
rs1384899	0.84[ASN][1000 genomes]
rs1473452	0.89[AFR][1000 genomes]
rs1483842	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1531871	0.83[ASN][1000 genomes]
rs62235603	0.99[ASN][1000 genomes]
rs7623744	0.84[AFR][1000 genomes]
rs7648812	0.89[AFR][1000 genomes]
rs8179975	0.89[AFR][1000 genomes]
rs8180044	0.85[ASN][1000 genomes]
rs922942	0.89[AFR][1000 genomes]
rs922943	0.89[AFR][1000 genomes]
rs9310778	0.82[AFR][1000 genomes]
rs9310779	0.89[AFR][1000 genomes]
rs9835390	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9835396	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9835679	0.86[AFR][1000 genomes]
rs9880591	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63772800-63788800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:63777400-63806800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:63778800-63794000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:63780200-63814800	Weak transcription	Psoas Muscle	Psoas
5	chr2:63780800-63791800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:63780800-63792200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:63781000-63793200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:63781000-63804000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:63781200-63790000	Weak transcription	Right Ventricle	heart
10	chr2:63781800-63787000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:63782600-63793400	Weak transcription	Lung	lung
12	chr2:63783000-63789000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:63783400-63788800	Weak transcription	Primary T cells from cord blood	blood
14	chr2:63783400-63798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr2:63783600-63790600	Weak transcription	Liver	Liver
16	chr2:63783600-63793800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr2:63783800-63787200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr2:63783800-63788800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr2:63783800-63790000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr2:63785800-63789800	Weak transcription	Fetal Heart	heart
21	chr2:63786200-63789000	Weak transcription	Adipose Nuclei	Adipose

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