Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:25402908..25405265-chr3:25407637..25410309,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10510563	0.83[EUR][1000 genomes]
rs10510566	0.88[EUR][1000 genomes]
rs10510567	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1108138	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11712065	0.88[EUR][1000 genomes]
rs12496273	0.88[EUR][1000 genomes]
rs12496365	0.88[EUR][1000 genomes]
rs12497123	0.88[EUR][1000 genomes]
rs13068891	1.00[YRI][hapmap]
rs13070614	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13080165	0.88[EUR][1000 genomes]
rs13093379	0.88[EUR][1000 genomes]
rs13094358	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13325064	0.91[ASN][1000 genomes]
rs1384899	0.95[ASN][1000 genomes]
rs1483831	0.86[EUR][1000 genomes]
rs1483842	0.94[ASN][1000 genomes]
rs1531871	0.94[ASN][1000 genomes]
rs17523645	0.83[AMR][1000 genomes]
rs34015957	0.88[EUR][1000 genomes]
rs35569984	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35946440	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36013124	0.84[AMR][1000 genomes]
rs4681019	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61694119	0.88[EUR][1000 genomes]
rs62235603	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8180044	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25407600-25410200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:25408600-25408800	Enhancers	Fetal Intestine Small	intestine
3	chr3:25408600-25412000	Weak transcription	Fetal Intestine Large	intestine

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