Variant report

Variant	rs13075191
Chromosome Location	chr3:162010685-162010686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10936274	0.96[ASN][1000 genomes]
rs11925201	0.94[ASN][1000 genomes]
rs12636302	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12638460	1.00[ASN][1000 genomes]
rs1387007	0.91[ASN][1000 genomes]
rs1387008	0.95[ASN][1000 genomes]
rs1488566	0.89[ASN][1000 genomes]
rs2054887	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6441441	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6773758	0.95[ASN][1000 genomes]
rs7651936	0.99[ASN][1000 genomes]
rs9832510	0.96[ASN][1000 genomes]
rs9860966	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9864115	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9875902	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9883161	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460919	chr3:161799090-162094430	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv592144	chr3:161799090-162094430	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2751981	chr3:161863459-162016298	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877721	chr3:161878713-162303276	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1006802	chr3:161921063-162599175	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3491145	chr3:162008260-162012374	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3491146	chr3:162008260-162012374	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162003400-162013200	Weak transcription	Aorta	Aorta
2	chr3:162004400-162013000	Weak transcription	Psoas Muscle	Psoas
3	chr3:162004600-162013000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:162010200-162011000	Enhancers	Colon Smooth Muscle	Colon
5	chr3:162010600-162010800	Enhancers	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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