Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:162004198..162005770-chr3:162006537..162008714,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10936274	0.91[ASN][1000 genomes]
rs1109921	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11925201	0.89[ASN][1000 genomes]
rs12636302	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12638460	0.95[ASN][1000 genomes]
rs13075191	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1387007	0.94[ASN][1000 genomes]
rs1387008	1.00[ASN][1000 genomes]
rs1488566	0.93[ASN][1000 genomes]
rs16846945	0.80[AFR][1000 genomes]
rs2054887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2897170	0.87[AFR][1000 genomes]
rs6441441	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441442	0.84[EUR][1000 genomes]
rs6441444	0.84[EUR][1000 genomes]
rs6773758	0.90[ASN][1000 genomes]
rs6788372	0.87[AFR][1000 genomes]
rs73876236	0.87[AFR][1000 genomes]
rs7651936	0.94[ASN][1000 genomes]
rs9832510	0.91[ASN][1000 genomes]
rs9833288	0.80[EUR][1000 genomes]
rs9860966	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875902	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460919	chr3:161799090-162094430	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv592144	chr3:161799090-162094430	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2751981	chr3:161863459-162016298	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877721	chr3:161878713-162303276	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1006802	chr3:161921063-162599175	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162003200-162004400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:162003400-162004800	Enhancers	Dnd41	blood
3	chr3:162003400-162005400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:162003400-162013200	Weak transcription	Aorta	Aorta
5	chr3:162003600-162004400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:162003600-162004400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
7	chr3:162003600-162004400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:162003600-162004400	Enhancers	A549	lung
9	chr3:162003800-162004400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:162004000-162004400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:162004000-162004400	Enhancers	Fetal Brain Male	brain
12	chr3:162004000-162004400	Enhancers	Fetal Heart	heart
13	chr3:162004000-162004400	Enhancers	Psoas Muscle	Psoas
14	chr3:162004000-162004400	Enhancers	HSMM	muscle
15	chr3:162004200-162004400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:162004200-162004400	Enhancers	NHDF-Ad	bronchial
17	chr3:162004200-162004400	Flanking Active TSS	Osteobl	bone
18	chr3:162004200-162004600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: