Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:162004198..162005770-chr3:162006537..162008714,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10936274	0.89[ASN][1000 genomes]
rs1109921	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11925201	0.88[ASN][1000 genomes]
rs12636302	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12638460	0.94[ASN][1000 genomes]
rs13075191	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1387007	0.93[ASN][1000 genomes]
rs1387008	0.99[ASN][1000 genomes]
rs1488566	0.91[ASN][1000 genomes]
rs16846945	0.80[AFR][1000 genomes]
rs2897170	0.87[AFR][1000 genomes]
rs6441441	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6441442	0.82[EUR][1000 genomes]
rs6441444	0.82[EUR][1000 genomes]
rs6773758	0.89[ASN][1000 genomes]
rs6788372	0.87[AFR][1000 genomes]
rs73876236	0.87[AFR][1000 genomes]
rs7651936	0.92[ASN][1000 genomes]
rs9832510	0.89[ASN][1000 genomes]
rs9860966	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9864115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9875902	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9883161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460919	chr3:161799090-162094430	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv592144	chr3:161799090-162094430	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2751981	chr3:161863459-162016298	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877721	chr3:161878713-162303276	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1006802	chr3:161921063-162599175	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162003400-162005400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:162003400-162013200	Weak transcription	Aorta	Aorta
3	chr3:162004400-162006200	Weak transcription	A549	lung
4	chr3:162004400-162013000	Weak transcription	Psoas Muscle	Psoas
5	chr3:162004600-162013000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:162004800-162005400	Weak transcription	Dnd41	blood

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