Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10936274	0.91[ASN][1000 genomes]
rs1109921	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11925201	0.89[ASN][1000 genomes]
rs12636302	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12638460	0.95[ASN][1000 genomes]
rs13075191	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1387007	0.94[ASN][1000 genomes]
rs1387008	1.00[ASN][1000 genomes]
rs1488566	0.93[ASN][1000 genomes]
rs2054887	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2897170	0.85[AFR][1000 genomes]
rs6441442	0.84[EUR][1000 genomes]
rs6441444	0.84[EUR][1000 genomes]
rs6773758	0.90[ASN][1000 genomes]
rs6788372	0.85[AFR][1000 genomes]
rs73876236	0.85[AFR][1000 genomes]
rs7651936	0.94[ASN][1000 genomes]
rs9832510	0.91[ASN][1000 genomes]
rs9833288	0.80[EUR][1000 genomes]
rs9860966	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864115	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875902	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9883161	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460919	chr3:161799090-162094430	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv592144	chr3:161799090-162094430	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2751981	chr3:161863459-162016298	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877721	chr3:161878713-162303276	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877723	chr3:161915857-162003134	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1006802	chr3:161921063-162599175	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162003000-162003200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr3:162003000-162003600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:162003000-162003600	Enhancers	Adipose Nuclei	Adipose
4	chr3:162003000-162003800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:162003000-162003800	Enhancers	Fetal Lung	lung

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