Variant report

Variant	rs13085801
Chromosome Location	chr3:34682457-34682458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10510660	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10865859	0.84[ASN][1000 genomes]
rs1117173	0.84[ASN][1000 genomes]
rs1117663	0.83[ASN][1000 genomes]
rs11525737	0.85[ASN][1000 genomes]
rs11525738	0.83[ASN][1000 genomes]
rs11705846	0.83[ASN][1000 genomes]
rs11708235	0.82[ASN][1000 genomes]
rs11712215	0.82[ASN][1000 genomes]
rs11715912	0.82[ASN][1000 genomes]
rs11716737	0.81[ASN][1000 genomes]
rs11718900	0.82[ASN][1000 genomes]
rs11719003	0.82[ASN][1000 genomes]
rs11721181	0.81[ASN][1000 genomes]
rs11916603	0.80[ASN][1000 genomes]
rs11919593	0.81[ASN][1000 genomes]
rs12233438	0.85[ASN][1000 genomes]
rs12486760	0.96[ASN][1000 genomes]
rs12487200	0.84[ASN][1000 genomes]
rs12492940	0.84[ASN][1000 genomes]
rs12636214	0.85[ASN][1000 genomes]
rs12636313	0.82[ASN][1000 genomes]
rs13058934	0.84[ASN][1000 genomes]
rs13059811	0.83[ASN][1000 genomes]
rs13060690	0.83[ASN][1000 genomes]
rs13066312	0.84[ASN][1000 genomes]
rs13066328	0.84[ASN][1000 genomes]
rs13072842	0.83[ASN][1000 genomes]
rs13080033	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13080219	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13082790	0.88[ASN][1000 genomes]
rs13088951	0.82[ASN][1000 genomes]
rs13089465	0.82[ASN][1000 genomes]
rs1468835	0.81[ASN][1000 genomes]
rs1520632	0.83[ASN][1000 genomes]
rs1520645	0.83[ASN][1000 genomes]
rs1581333	0.82[ASN][1000 genomes]
rs1589338	0.82[ASN][1000 genomes]
rs1607771	0.83[ASN][1000 genomes]
rs1607773	0.82[ASN][1000 genomes]
rs1851058	0.82[ASN][1000 genomes]
rs1966433	0.81[ASN][1000 genomes]
rs1990672	0.91[ASN][1000 genomes]
rs2011180	0.81[ASN][1000 genomes]
rs2080424	0.83[ASN][1000 genomes]
rs2098399	0.81[ASN][1000 genomes]
rs2193080	0.83[ASN][1000 genomes]
rs2216183	0.81[ASN][1000 genomes]
rs2358501	0.84[ASN][1000 genomes]
rs2358502	0.82[ASN][1000 genomes]
rs28505771	0.82[ASN][1000 genomes]
rs34913545	0.82[ASN][1000 genomes]
rs35241516	0.83[ASN][1000 genomes]
rs35952247	0.82[ASN][1000 genomes]
rs4465892	0.82[ASN][1000 genomes]
rs4467396	0.83[ASN][1000 genomes]
rs4572717	0.82[ASN][1000 genomes]
rs4678700	0.81[ASN][1000 genomes]
rs55722413	0.80[ASN][1000 genomes]
rs59785806	0.81[ASN][1000 genomes]
rs60107689	0.83[ASN][1000 genomes]
rs6550286	0.83[ASN][1000 genomes]
rs66511672	0.84[ASN][1000 genomes]
rs6762092	0.84[AFR][1000 genomes]
rs6762310	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6764675	0.84[ASN][1000 genomes]
rs6766288	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6770132	0.82[ASN][1000 genomes]
rs6770932	0.81[ASN][1000 genomes]
rs6779356	0.84[ASN][1000 genomes]
rs6794876	0.81[ASN][1000 genomes]
rs6799362	0.80[ASN][1000 genomes]
rs6799370	0.82[ASN][1000 genomes]
rs6799746	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6806506	0.82[ASN][1000 genomes]
rs6806757	0.82[ASN][1000 genomes]
rs7614543	0.82[ASN][1000 genomes]
rs7624543	0.84[ASN][1000 genomes]
rs7624853	0.84[ASN][1000 genomes]
rs7632406	0.96[ASN][1000 genomes]
rs7637897	0.83[ASN][1000 genomes]
rs7639229	0.90[ASN][1000 genomes]
rs7639870	0.84[ASN][1000 genomes]
rs7643365	0.82[ASN][1000 genomes]
rs7649251	0.82[ASN][1000 genomes]
rs7650207	0.84[ASN][1000 genomes]
rs918086	0.99[ASN][1000 genomes]
rs974687	0.81[ASN][1000 genomes]
rs9809734	0.83[ASN][1000 genomes]
rs9878478	0.82[ASN][1000 genomes]
rs9878670	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820420	chr3:34662157-34708263	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34682000-34683600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:34682000-34683800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:34682200-34682600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links