Variant report

Variant	rs1520645
Chromosome Location	chr3:34720267-34720268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10510660	0.90[ASN][1000 genomes]
rs10865859	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1117173	0.95[ASN][1000 genomes]
rs1117663	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11525737	0.96[ASN][1000 genomes]
rs11525738	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11705846	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11712215	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11715912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11716705	0.94[ASN][1000 genomes]
rs11716737	0.98[ASN][1000 genomes]
rs11718900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11719003	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11721181	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11916603	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11919593	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12233438	0.96[ASN][1000 genomes]
rs12486760	0.81[ASN][1000 genomes]
rs12487200	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12491003	0.93[ASN][1000 genomes]
rs12492940	0.98[ASN][1000 genomes]
rs12493864	0.83[ASN][1000 genomes]
rs12636195	0.84[ASN][1000 genomes]
rs12636214	0.96[ASN][1000 genomes]
rs12636313	0.93[ASN][1000 genomes]
rs13058934	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13059811	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13060690	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13066312	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13066328	0.98[ASN][1000 genomes]
rs13072344	0.93[ASN][1000 genomes]
rs13072842	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13080033	0.84[ASN][1000 genomes]
rs13080219	0.84[ASN][1000 genomes]
rs13085801	0.83[ASN][1000 genomes]
rs13088951	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13089465	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1362538	0.83[ASN][1000 genomes]
rs1362539	0.84[ASN][1000 genomes]
rs1420507	0.83[ASN][1000 genomes]
rs1420508	0.84[ASN][1000 genomes]
rs1420510	0.84[ASN][1000 genomes]
rs1420511	0.84[ASN][1000 genomes]
rs1420514	0.84[ASN][1000 genomes]
rs1468835	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1520632	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1581333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1589338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1607771	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1607773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1833229	0.83[ASN][1000 genomes]
rs1851058	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1894931	0.84[ASN][1000 genomes]
rs1966433	0.98[ASN][1000 genomes]
rs1990672	0.90[ASN][1000 genomes]
rs2011180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2080424	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2098399	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2111090	0.83[ASN][1000 genomes]
rs2160465	0.83[ASN][1000 genomes]
rs2193080	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2193082	0.84[ASN][1000 genomes]
rs2216183	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2358501	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2358502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2358506	0.84[ASN][1000 genomes]
rs28505771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34913545	0.96[ASN][1000 genomes]
rs35241516	0.94[ASN][1000 genomes]
rs35952247	0.96[ASN][1000 genomes]
rs4465892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4467396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4678700	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs55722413	0.97[ASN][1000 genomes]
rs55920160	0.84[ASN][1000 genomes]
rs55980738	0.83[ASN][1000 genomes]
rs58892601	0.83[ASN][1000 genomes]
rs59785806	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60107689	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62249292	0.83[ASN][1000 genomes]
rs62249293	0.84[ASN][1000 genomes]
rs62249297	0.84[ASN][1000 genomes]
rs6550286	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66511672	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs666556	0.83[ASN][1000 genomes]
rs6762092	0.90[ASN][1000 genomes]
rs6762310	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6764675	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6766288	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6768414	0.83[ASN][1000 genomes]
rs6770132	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6770932	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6772275	0.83[ASN][1000 genomes]
rs6779356	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6794876	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6799362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6799370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6799746	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6806506	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6806757	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6807258	0.84[ASN][1000 genomes]
rs7614543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7624543	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7624853	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7632406	0.80[ASN][1000 genomes]
rs7637193	0.84[ASN][1000 genomes]
rs7637897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7639870	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7643365	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7649251	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7650207	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7651195	0.83[ASN][1000 genomes]
rs918086	0.84[ASN][1000 genomes]
rs974687	0.98[ASN][1000 genomes]
rs9809734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9878670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816528	chr3:34683998-34757534	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34717800-34721600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:34718200-34721000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:34718400-34721600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:34719800-34720400	Enhancers	Fetal Intestine Small	intestine
5	chr3:34719800-34721400	Enhancers	Fetal Intestine Large	intestine
6	chr3:34719800-34722600	Enhancers	K562	blood
7	chr3:34720200-34720400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:34720200-34720800	Enhancers	Fetal Heart	heart

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