Variant report

Variant	rs666556
Chromosome Location	chr3:34800799-34800800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34800787..34803715-chr3:34816923..34819918,2	MCF-7	breast:

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10865859	0.82[ASN][1000 genomes]
rs1117663	0.81[ASN][1000 genomes]
rs11525737	0.80[ASN][1000 genomes]
rs11525738	0.81[ASN][1000 genomes]
rs11705846	0.83[ASN][1000 genomes]
rs11708235	0.85[ASN][1000 genomes]
rs11712215	0.85[ASN][1000 genomes]
rs11715912	0.85[ASN][1000 genomes]
rs11716705	0.81[ASN][1000 genomes]
rs11716737	0.84[ASN][1000 genomes]
rs11718900	0.85[ASN][1000 genomes]
rs11719003	0.85[ASN][1000 genomes]
rs11721181	0.84[ASN][1000 genomes]
rs11916603	0.83[ASN][1000 genomes]
rs11919593	0.84[ASN][1000 genomes]
rs12233438	0.80[ASN][1000 genomes]
rs12487200	0.82[ASN][1000 genomes]
rs12491003	0.80[ASN][1000 genomes]
rs12492940	0.82[ASN][1000 genomes]
rs12493864	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12636195	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12636214	0.80[ASN][1000 genomes]
rs13058934	0.82[ASN][1000 genomes]
rs13059811	0.83[ASN][1000 genomes]
rs13060690	0.83[ASN][1000 genomes]
rs13066312	0.82[ASN][1000 genomes]
rs13066328	0.82[ASN][1000 genomes]
rs13072842	0.81[ASN][1000 genomes]
rs13088951	0.85[ASN][1000 genomes]
rs13089465	0.85[ASN][1000 genomes]
rs1362538	0.98[ASN][1000 genomes]
rs1362539	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1420507	0.98[ASN][1000 genomes]
rs1420508	0.99[ASN][1000 genomes]
rs1420510	0.98[ASN][1000 genomes]
rs1420511	0.99[ASN][1000 genomes]
rs1420514	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1468835	0.84[ASN][1000 genomes]
rs1520632	0.81[ASN][1000 genomes]
rs1520645	0.83[ASN][1000 genomes]
rs1581333	0.85[ASN][1000 genomes]
rs1589338	0.85[ASN][1000 genomes]
rs1607771	0.81[ASN][1000 genomes]
rs1607773	0.85[ASN][1000 genomes]
rs1833229	1.00[ASN][1000 genomes]
rs1851058	0.85[ASN][1000 genomes]
rs1894931	0.99[ASN][1000 genomes]
rs1966433	0.84[ASN][1000 genomes]
rs2011180	0.84[ASN][1000 genomes]
rs2080424	0.81[ASN][1000 genomes]
rs2080427	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2080428	0.95[ASN][1000 genomes]
rs2098399	0.84[ASN][1000 genomes]
rs2111090	1.00[ASN][1000 genomes]
rs2160465	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2193080	0.81[ASN][1000 genomes]
rs2193082	0.99[ASN][1000 genomes]
rs2216183	0.84[ASN][1000 genomes]
rs2358501	0.82[ASN][1000 genomes]
rs2358502	0.85[ASN][1000 genomes]
rs2358506	0.99[ASN][1000 genomes]
rs28505771	0.85[ASN][1000 genomes]
rs34913545	0.80[ASN][1000 genomes]
rs35952247	0.80[ASN][1000 genomes]
rs4465892	0.85[ASN][1000 genomes]
rs4467396	0.83[ASN][1000 genomes]
rs4572717	0.85[ASN][1000 genomes]
rs4678700	0.84[ASN][1000 genomes]
rs479986	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55722413	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55920160	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55980738	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58892601	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59785806	0.84[ASN][1000 genomes]
rs60107689	0.81[ASN][1000 genomes]
rs62249292	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62249293	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62249296	0.91[ASN][1000 genomes]
rs62249297	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62249354	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6550286	0.81[ASN][1000 genomes]
rs6550291	0.93[ASN][1000 genomes]
rs66511672	0.82[ASN][1000 genomes]
rs6762310	0.81[ASN][1000 genomes]
rs6764675	0.82[ASN][1000 genomes]
rs6766288	0.81[ASN][1000 genomes]
rs6768414	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770132	0.85[ASN][1000 genomes]
rs6770932	0.84[ASN][1000 genomes]
rs6772275	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779356	0.82[ASN][1000 genomes]
rs6794876	0.84[ASN][1000 genomes]
rs6799362	0.83[ASN][1000 genomes]
rs6799370	0.85[ASN][1000 genomes]
rs6799746	0.81[ASN][1000 genomes]
rs6806506	0.85[ASN][1000 genomes]
rs6806757	0.85[ASN][1000 genomes]
rs6807258	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7614543	0.85[ASN][1000 genomes]
rs7624543	0.82[ASN][1000 genomes]
rs7624853	0.82[ASN][1000 genomes]
rs7637193	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7637897	0.83[ASN][1000 genomes]
rs7639870	0.82[ASN][1000 genomes]
rs7649251	0.82[ASN][1000 genomes]
rs7650207	0.82[ASN][1000 genomes]
rs7651195	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs974687	0.84[ASN][1000 genomes]
rs9809734	0.83[ASN][1000 genomes]
rs9878478	0.85[ASN][1000 genomes]
rs9878670	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014239	chr3:34734012-34806671	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34800400-34801000	Enhancers	Fetal Muscle Leg	muscle

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