Variant report

Variant	rs6550291
Chromosome Location	chr3:34773198-34773199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12493864	0.88[ASN][1000 genomes]
rs12636195	0.92[ASN][1000 genomes]
rs1362538	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1362539	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1420507	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1420508	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1420510	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1420511	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1420514	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1833229	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1894931	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2080427	0.89[ASN][1000 genomes]
rs2080428	0.88[ASN][1000 genomes]
rs2111090	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2160465	0.93[ASN][1000 genomes]
rs2193082	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2358506	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs479986	0.83[ASN][1000 genomes]
rs55920160	0.92[ASN][1000 genomes]
rs55980738	0.93[ASN][1000 genomes]
rs58892601	0.93[ASN][1000 genomes]
rs62249292	0.91[ASN][1000 genomes]
rs62249293	0.92[ASN][1000 genomes]
rs62249296	0.84[ASN][1000 genomes]
rs62249297	0.92[ASN][1000 genomes]
rs62249354	0.88[ASN][1000 genomes]
rs666556	0.93[ASN][1000 genomes]
rs6768414	0.93[ASN][1000 genomes]
rs6772275	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6807258	0.92[ASN][1000 genomes]
rs7637193	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7651195	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997333	chr3:34734012-34795588	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1014239	chr3:34734012-34806671	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34772800-34773800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:34773000-34773400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:34773000-34773400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:34773000-34773800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:34773000-34773800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:34773000-34774000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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