Variant report

Variant	rs2080427
Chromosome Location	chr3:34775066-34775067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11708235	0.81[ASN][1000 genomes]
rs11712215	0.81[ASN][1000 genomes]
rs11715912	0.81[ASN][1000 genomes]
rs11718900	0.81[ASN][1000 genomes]
rs11719003	0.81[ASN][1000 genomes]
rs12493864	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12636195	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13088951	0.81[ASN][1000 genomes]
rs13089465	0.81[ASN][1000 genomes]
rs1362538	0.94[ASN][1000 genomes]
rs1362539	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1420507	0.94[ASN][1000 genomes]
rs1420508	0.95[ASN][1000 genomes]
rs1420510	0.93[ASN][1000 genomes]
rs1420511	0.95[ASN][1000 genomes]
rs1420514	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1581333	0.81[ASN][1000 genomes]
rs1589338	0.81[ASN][1000 genomes]
rs1607773	0.81[ASN][1000 genomes]
rs1833229	0.96[ASN][1000 genomes]
rs1851058	0.81[ASN][1000 genomes]
rs1894931	0.95[ASN][1000 genomes]
rs2080428	0.90[ASN][1000 genomes]
rs2111090	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2160465	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2193082	0.95[ASN][1000 genomes]
rs2358502	0.81[ASN][1000 genomes]
rs2358506	0.95[ASN][1000 genomes]
rs28505771	0.81[ASN][1000 genomes]
rs4465892	0.81[ASN][1000 genomes]
rs4572717	0.81[ASN][1000 genomes]
rs479986	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55722413	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55920160	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55980738	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58892601	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62249292	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62249293	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62249296	0.87[ASN][1000 genomes]
rs62249297	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62249354	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6550291	0.89[ASN][1000 genomes]
rs666556	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6768414	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6770132	0.81[ASN][1000 genomes]
rs6772275	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6799370	0.81[ASN][1000 genomes]
rs6806506	0.81[ASN][1000 genomes]
rs6806757	0.81[ASN][1000 genomes]
rs6807258	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7614543	0.81[ASN][1000 genomes]
rs7637193	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7651195	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9878478	0.81[ASN][1000 genomes]
rs9878670	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997333	chr3:34734012-34795588	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1014239	chr3:34734012-34806671	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34774400-34776400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links