Variant report

Variant	rs55722413
Chromosome Location	chr3:34743286-34743287
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10510660	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10865859	0.96[ASN][1000 genomes]
rs1117173	0.92[ASN][1000 genomes]
rs1117663	0.94[ASN][1000 genomes]
rs11525737	0.93[ASN][1000 genomes]
rs11525738	0.94[ASN][1000 genomes]
rs11705846	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11708235	0.98[ASN][1000 genomes]
rs11712215	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11715912	0.98[ASN][1000 genomes]
rs11716705	0.94[ASN][1000 genomes]
rs11716737	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11718900	0.98[ASN][1000 genomes]
rs11719003	0.98[ASN][1000 genomes]
rs11721181	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11916603	0.97[ASN][1000 genomes]
rs11919593	0.98[ASN][1000 genomes]
rs12233438	0.93[ASN][1000 genomes]
rs12487200	0.96[ASN][1000 genomes]
rs12491003	0.93[ASN][1000 genomes]
rs12492940	0.96[ASN][1000 genomes]
rs12493864	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12636195	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12636214	0.93[ASN][1000 genomes]
rs12636313	0.90[ASN][1000 genomes]
rs13058934	0.96[ASN][1000 genomes]
rs13059811	0.97[ASN][1000 genomes]
rs13060690	0.97[ASN][1000 genomes]
rs13066312	0.96[ASN][1000 genomes]
rs13066328	0.96[ASN][1000 genomes]
rs13072344	0.90[ASN][1000 genomes]
rs13072842	0.94[ASN][1000 genomes]
rs13080033	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs13080219	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs13085801	0.80[ASN][1000 genomes]
rs13088951	0.98[ASN][1000 genomes]
rs13089465	0.98[ASN][1000 genomes]
rs1362538	0.86[ASN][1000 genomes]
rs1362539	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1420507	0.86[ASN][1000 genomes]
rs1420508	0.87[ASN][1000 genomes]
rs1420510	0.87[ASN][1000 genomes]
rs1420511	0.87[ASN][1000 genomes]
rs1420514	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1468835	0.98[ASN][1000 genomes]
rs1520632	0.94[ASN][1000 genomes]
rs1520645	0.97[ASN][1000 genomes]
rs1581333	0.98[ASN][1000 genomes]
rs1589338	0.98[ASN][1000 genomes]
rs1607771	0.94[ASN][1000 genomes]
rs1607773	0.98[ASN][1000 genomes]
rs1833229	0.86[ASN][1000 genomes]
rs1851058	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1894931	0.87[ASN][1000 genomes]
rs1966433	0.98[ASN][1000 genomes]
rs1990672	0.87[ASN][1000 genomes]
rs2011180	0.98[ASN][1000 genomes]
rs2080424	0.94[ASN][1000 genomes]
rs2080427	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2080428	0.81[ASN][1000 genomes]
rs2098399	0.98[ASN][1000 genomes]
rs2111090	0.86[ASN][1000 genomes]
rs2160465	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2193080	0.94[ASN][1000 genomes]
rs2193082	0.87[ASN][1000 genomes]
rs2216183	0.98[ASN][1000 genomes]
rs2358501	0.96[ASN][1000 genomes]
rs2358502	0.98[ASN][1000 genomes]
rs2358506	0.87[ASN][1000 genomes]
rs28505771	0.98[ASN][1000 genomes]
rs34913545	0.93[ASN][1000 genomes]
rs35241516	0.91[ASN][1000 genomes]
rs35952247	0.93[ASN][1000 genomes]
rs4465892	0.98[ASN][1000 genomes]
rs4467396	0.97[ASN][1000 genomes]
rs4572717	0.98[ASN][1000 genomes]
rs4678700	0.98[ASN][1000 genomes]
rs55920160	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55980738	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58892601	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59785806	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60107689	0.94[ASN][1000 genomes]
rs62249292	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62249293	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62249297	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62249354	0.82[ASN][1000 genomes]
rs6550286	0.94[ASN][1000 genomes]
rs66511672	0.96[ASN][1000 genomes]
rs666556	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6762092	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6762310	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6764675	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6766288	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6768414	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6770132	0.98[ASN][1000 genomes]
rs6770932	0.98[ASN][1000 genomes]
rs6772275	0.86[ASN][1000 genomes]
rs6779356	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6794876	0.98[ASN][1000 genomes]
rs6799362	0.97[ASN][1000 genomes]
rs6799370	0.98[ASN][1000 genomes]
rs6799746	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6806506	0.98[ASN][1000 genomes]
rs6806757	0.98[ASN][1000 genomes]
rs6807258	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7614543	0.98[ASN][1000 genomes]
rs7624543	0.96[ASN][1000 genomes]
rs7624853	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7637193	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7637897	0.97[ASN][1000 genomes]
rs7639870	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7643365	0.93[ASN][1000 genomes]
rs7649251	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7650207	0.96[ASN][1000 genomes]
rs7651195	0.86[ASN][1000 genomes]
rs918086	0.81[ASN][1000 genomes]
rs974687	0.98[ASN][1000 genomes]
rs9809734	0.97[ASN][1000 genomes]
rs9878478	0.98[ASN][1000 genomes]
rs9878670	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816528	chr3:34683998-34757534	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv997333	chr3:34734012-34795588	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1014239	chr3:34734012-34806671	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34742600-34743400	ZNF genes & repeats	Thymus	Thymus

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