Variant report

Variant	rs2080428
Chromosome Location	chr3:34800554-34800555
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11716705	0.82[ASN][1000 genomes]
rs12493864	0.90[ASN][1000 genomes]
rs12636195	0.94[ASN][1000 genomes]
rs1362538	0.93[ASN][1000 genomes]
rs1362539	0.94[ASN][1000 genomes]
rs1420507	0.93[ASN][1000 genomes]
rs1420508	0.94[ASN][1000 genomes]
rs1420510	0.93[ASN][1000 genomes]
rs1420511	0.94[ASN][1000 genomes]
rs1420514	0.94[ASN][1000 genomes]
rs1833229	0.95[ASN][1000 genomes]
rs1894931	0.94[ASN][1000 genomes]
rs2080427	0.90[ASN][1000 genomes]
rs2111090	0.95[ASN][1000 genomes]
rs2160465	0.95[ASN][1000 genomes]
rs2193082	0.94[ASN][1000 genomes]
rs2358506	0.94[ASN][1000 genomes]
rs479986	0.85[ASN][1000 genomes]
rs55722413	0.81[ASN][1000 genomes]
rs55920160	0.94[ASN][1000 genomes]
rs55980738	0.95[ASN][1000 genomes]
rs58892601	0.95[ASN][1000 genomes]
rs62249292	0.93[ASN][1000 genomes]
rs62249293	0.94[ASN][1000 genomes]
rs62249296	0.97[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62249297	0.94[ASN][1000 genomes]
rs62249354	0.90[ASN][1000 genomes]
rs6550291	0.88[ASN][1000 genomes]
rs666556	0.95[ASN][1000 genomes]
rs6768414	0.95[ASN][1000 genomes]
rs6772275	0.95[ASN][1000 genomes]
rs6807258	0.94[ASN][1000 genomes]
rs7637193	0.94[ASN][1000 genomes]
rs7651195	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014239	chr3:34734012-34806671	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34800400-34801000	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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