Variant report
| Variant | rs62249296 |
|---|---|
| Chromosome Location | chr3:34770496-34770497 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11716705 | 0.80[ASN][1000 genomes] |
| rs12493864 | 0.87[ASN][1000 genomes] |
| rs12636195 | 0.92[ASN][1000 genomes] |
| rs1362538 | 0.91[ASN][1000 genomes] |
| rs1362539 | 0.92[ASN][1000 genomes] |
| rs1420507 | 0.91[ASN][1000 genomes] |
| rs1420508 | 0.92[ASN][1000 genomes] |
| rs1420510 | 0.91[ASN][1000 genomes] |
| rs1420511 | 0.92[ASN][1000 genomes] |
| rs1420514 | 0.92[ASN][1000 genomes] |
| rs1833229 | 0.91[ASN][1000 genomes] |
| rs1894931 | 0.92[ASN][1000 genomes] |
| rs2080427 | 0.87[ASN][1000 genomes] |
| rs2080428 | 0.97[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2111090 | 0.91[ASN][1000 genomes] |
| rs2160465 | 0.91[ASN][1000 genomes] |
| rs2193082 | 0.92[ASN][1000 genomes] |
| rs2358506 | 0.92[ASN][1000 genomes] |
| rs479986 | 0.85[ASN][1000 genomes] |
| rs55920160 | 0.92[ASN][1000 genomes] |
| rs55980738 | 0.91[ASN][1000 genomes] |
| rs58892601 | 0.91[ASN][1000 genomes] |
| rs62249292 | 0.91[ASN][1000 genomes] |
| rs62249293 | 0.92[ASN][1000 genomes] |
| rs62249297 | 0.92[ASN][1000 genomes] |
| rs62249354 | 0.87[ASN][1000 genomes] |
| rs6550291 | 0.84[ASN][1000 genomes] |
| rs666556 | 0.91[ASN][1000 genomes] |
| rs6768414 | 0.91[ASN][1000 genomes] |
| rs6772275 | 0.91[ASN][1000 genomes] |
| rs6807258 | 0.92[ASN][1000 genomes] |
| rs7637193 | 0.92[ASN][1000 genomes] |
| rs7651195 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv997333 | chr3:34734012-34795588 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv1014239 | chr3:34734012-34806671 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv834654 | chr3:34747802-34916657 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv834655 | chr3:34752929-34898824 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:34768000-34772800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr3:34768000-34773000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
