Variant report

Variant	rs13095000
Chromosome Location	chr3:112331071-112331072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112317258..112319990-chr3:112330673..112332621,2	K562	blood:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10511317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs11919639	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs11921669	0.82[EUR][1000 genomes]
rs13059364	0.92[EUR][1000 genomes]
rs13063173	0.92[EUR][1000 genomes]
rs13064534	0.86[EUR][1000 genomes]
rs13065703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs13070342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs13071492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs13079599	1.00[CEU][hapmap]
rs13080547	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080749	0.92[EUR][1000 genomes]
rs13081201	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13081265	0.89[EUR][1000 genomes]
rs13081632	0.89[EUR][1000 genomes]
rs13088339	1.00[EUR][1000 genomes]
rs13088349	1.00[EUR][1000 genomes]
rs13088467	1.00[EUR][1000 genomes]
rs13094161	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13094649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs13096943	0.89[EUR][1000 genomes]
rs16845067	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16859629	0.86[JPT][hapmap]
rs16859632	0.86[JPT][hapmap]
rs16859661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs16859674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs16859727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs16859758	0.92[EUR][1000 genomes]
rs16859775	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16859779	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16859787	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16859793	1.00[EUR][1000 genomes]
rs16859849	1.00[CEU][hapmap]
rs1994711	1.00[JPT][hapmap]
rs2220656	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2705526	0.85[EUR][1000 genomes]
rs28365853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2942062	1.00[JPT][hapmap]
rs34080815	0.92[EUR][1000 genomes]
rs34139211	0.92[EUR][1000 genomes]
rs34248586	0.92[EUR][1000 genomes]
rs34284082	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34596334	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34597203	0.92[EUR][1000 genomes]
rs34645913	0.92[EUR][1000 genomes]
rs34829517	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34889961	0.92[EUR][1000 genomes]
rs34949685	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34962178	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35107041	0.82[EUR][1000 genomes]
rs35240469	0.92[EUR][1000 genomes]
rs35255669	1.00[EUR][1000 genomes]
rs35349986	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35512450	0.92[EUR][1000 genomes]
rs35526995	0.92[EUR][1000 genomes]
rs35529363	1.00[EUR][1000 genomes]
rs35692417	1.00[EUR][1000 genomes]
rs35709173	1.00[EUR][1000 genomes]
rs35725070	0.92[EUR][1000 genomes]
rs35748518	0.92[EUR][1000 genomes]
rs35803911	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35840933	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35931975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36025914	1.00[EUR][1000 genomes]
rs36031379	0.83[EUR][1000 genomes]
rs36045008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36061184	1.00[EUR][1000 genomes]
rs36146261	1.00[EUR][1000 genomes]
rs36153507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs3736270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs3736271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs3773698	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3773701	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3773704	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3773706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3773710	1.00[EUR][1000 genomes]
rs3821684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55742760	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56662636	0.92[EUR][1000 genomes]
rs56856838	0.92[EUR][1000 genomes]
rs56970524	1.00[EUR][1000 genomes]
rs57346109	0.92[EUR][1000 genomes]
rs58891772	0.92[EUR][1000 genomes]
rs59279185	0.92[EUR][1000 genomes]
rs59858117	0.92[EUR][1000 genomes]
rs60321074	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60646325	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66486470	0.92[EUR][1000 genomes]
rs66698345	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66791711	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66910014	0.92[EUR][1000 genomes]
rs67021100	0.89[EUR][1000 genomes]
rs67204151	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67513863	0.96[EUR][1000 genomes]
rs67940544	1.00[EUR][1000 genomes]
rs67944354	0.92[EUR][1000 genomes]
rs71317505	0.85[EUR][1000 genomes]
rs71317506	0.89[EUR][1000 genomes]
rs71317507	0.92[EUR][1000 genomes]
rs71317508	0.92[EUR][1000 genomes]
rs71317510	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs73229350	0.92[EUR][1000 genomes]
rs73229353	0.92[EUR][1000 genomes]
rs73229398	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs958935	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877342	chr3:112185025-112332629	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv591301	chr3:112252532-112332629	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112282400-112340000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:112298800-112335200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:112300200-112334000	Weak transcription	Fetal Stomach	stomach
4	chr3:112305800-112334800	Weak transcription	Aorta	Aorta
5	chr3:112312600-112346200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:112312600-112347200	Weak transcription	Fetal Intestine Large	intestine
7	chr3:112316200-112342800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:112316400-112333600	Weak transcription	A549	lung
9	chr3:112316600-112337600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:112318000-112341800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:112322200-112337200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:112323400-112332400	Strong transcription	Placenta Amnion	Placenta Amnion
13	chr3:112323800-112334600	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:112324400-112331200	Strong transcription	Adipose Nuclei	Adipose
15	chr3:112324600-112331800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:112326000-112333400	Weak transcription	Ovary	ovary
17	chr3:112327200-112331200	Weak transcription	HUVEC	blood vessel
18	chr3:112327200-112331600	Weak transcription	Fetal Lung	lung
19	chr3:112327800-112340600	Weak transcription	Fetal Kidney	kidney
20	chr3:112328200-112332200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:112328400-112332600	Genic enhancers	Osteobl	bone
22	chr3:112328600-112332600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:112329000-112331600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:112329000-112334400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:112329200-112333400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr3:112329400-112331200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:112329400-112333400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:112329400-112333400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:112329400-112334200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr3:112329600-112341800	Strong transcription	HSMM	muscle
31	chr3:112329800-112331400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:112330000-112332000	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr3:112330000-112335000	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr3:112330000-112336600	Strong transcription	NHDF-Ad	bronchial
35	chr3:112330200-112338400	Strong transcription	HSMMtube	muscle
36	chr3:112330400-112331200	Enhancers	H1 Cell Line	embryonic stem cell
37	chr3:112330400-112331400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:112330400-112331600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr3:112330400-112331600	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr3:112330400-112331800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr3:112330400-112335000	Strong transcription	NH-A	brain
42	chr3:112330400-112346800	Strong transcription	NHLF	lung
43	chr3:112330600-112331200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr3:112330600-112331200	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr3:112330600-112331200	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr3:112330600-112331200	Enhancers	Esophagus	oesophagus
47	chr3:112330600-112331200	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr3:112330600-112331400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr3:112330600-112331400	Enhancers	Fetal Heart	heart
50	chr3:112330600-112331600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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