Variant report

Variant	rs36025914
Chromosome Location	chr3:112277742-112277743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:112276557..112278101-chr3:112358499..112360515,2	MCF-7	breast:
2	chr3:112276984..112278823-chr3:112279239..112281629,2	MCF-7	breast:
3	chr3:112277732..112280310-chr3:112708635..112710146,2	K562	blood:
4	chr3:112271839..112274196-chr3:112276069..112278465,2	K562	blood:
5	chr3:112267679..112269481-chr3:112276502..112278431,2	MCF-7	breast:
6	chr3:111815832..111818403-chr3:112276886..112278586,2	MCF-7	breast:
7	chr3:112272255..112274870-chr3:112277581..112280165,3	K562	blood:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction
ENSG00000272844	Chromatin interaction
ENSG00000144848	Chromatin interaction
ENSG00000138459	Chromatin interaction
ENSG00000163607	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10511317	0.85[EUR][1000 genomes]
rs11919639	0.82[EUR][1000 genomes]
rs11921669	0.82[EUR][1000 genomes]
rs13059364	0.92[EUR][1000 genomes]
rs13063173	0.92[EUR][1000 genomes]
rs13064534	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13065703	0.92[EUR][1000 genomes]
rs13070342	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13071492	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13080547	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13080749	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13081201	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13081265	0.89[EUR][1000 genomes]
rs13081632	0.89[EUR][1000 genomes]
rs13088339	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13088349	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13088467	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13094161	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13094649	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13095000	1.00[EUR][1000 genomes]
rs13096943	0.89[EUR][1000 genomes]
rs16845067	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16859661	0.89[EUR][1000 genomes]
rs16859674	0.81[EUR][1000 genomes]
rs16859727	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16859758	0.92[EUR][1000 genomes]
rs16859775	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16859779	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16859787	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16859793	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1994712	0.81[AMR][1000 genomes]
rs2220656	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2705526	0.85[EUR][1000 genomes]
rs28365853	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34080815	0.92[EUR][1000 genomes]
rs34139211	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34248586	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34284082	0.96[EUR][1000 genomes]
rs34541731	1.00[EUR][1000 genomes]
rs34596334	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34597203	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34645913	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34829517	1.00[EUR][1000 genomes]
rs34889961	0.92[EUR][1000 genomes]
rs34949685	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34962178	1.00[EUR][1000 genomes]
rs35107041	0.82[EUR][1000 genomes]
rs35240469	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35255669	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35349986	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35512450	0.92[EUR][1000 genomes]
rs35526995	0.92[EUR][1000 genomes]
rs35529363	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35692417	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35709173	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35725070	0.92[EUR][1000 genomes]
rs35748518	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35803911	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35840933	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35931975	1.00[EUR][1000 genomes]
rs36031379	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36045008	1.00[EUR][1000 genomes]
rs36061184	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36146261	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36153507	1.00[EUR][1000 genomes]
rs3736269	0.92[EUR][1000 genomes]
rs3736270	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3736271	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3773698	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3773701	1.00[EUR][1000 genomes]
rs3773704	1.00[EUR][1000 genomes]
rs3773706	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3773710	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3821684	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55742760	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56662636	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56856838	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56970524	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57346109	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58891772	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59279185	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59305071	0.87[AFR][1000 genomes]
rs59858117	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60321074	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60646325	1.00[EUR][1000 genomes]
rs66486470	0.92[EUR][1000 genomes]
rs66698345	0.96[EUR][1000 genomes]
rs66791711	1.00[EUR][1000 genomes]
rs66910014	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67021100	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67204151	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67513863	0.96[EUR][1000 genomes]
rs67940544	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67944354	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71317505	0.85[EUR][1000 genomes]
rs71317506	0.89[EUR][1000 genomes]
rs71317507	0.92[EUR][1000 genomes]
rs71317508	0.92[EUR][1000 genomes]
rs71317510	1.00[EUR][1000 genomes]
rs724125	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73229350	0.92[EUR][1000 genomes]
rs73229353	0.92[EUR][1000 genomes]
rs73229398	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs958935	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998309	chr3:112130290-112278804	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv877342	chr3:112185025-112332629	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv591301	chr3:112252532-112332629	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36025914	SLC35A5	cis	Nerve Tibial	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112244400-112278200	Weak transcription	K562	blood
2	chr3:112244400-112278400	Weak transcription	HSMMtube	muscle
3	chr3:112245800-112279600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:112247600-112279600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:112249200-112278200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:112249200-112278400	Weak transcription	Aorta	Aorta
7	chr3:112249200-112279600	Weak transcription	Esophagus	oesophagus
8	chr3:112249200-112279600	Weak transcription	Gastric	stomach
9	chr3:112249200-112279800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:112249400-112279600	Weak transcription	Lung	lung
11	chr3:112252600-112278400	Weak transcription	Fetal Kidney	kidney
12	chr3:112253200-112278600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:112260000-112278200	Weak transcription	Fetal Brain Male	brain
14	chr3:112260400-112279600	Weak transcription	Pancreas	Pancrea
15	chr3:112266200-112278200	Weak transcription	Fetal Heart	heart
16	chr3:112266200-112278200	Weak transcription	NHLF	lung
17	chr3:112266200-112278400	Weak transcription	Colonic Mucosa	Colon
18	chr3:112266400-112278200	Weak transcription	NHEK	skin
19	chr3:112266800-112278400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:112267000-112278400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:112267000-112278400	Weak transcription	NHDF-Ad	bronchial
22	chr3:112267200-112278400	Weak transcription	Thymus	Thymus
23	chr3:112267200-112279200	Weak transcription	Right Ventricle	heart
24	chr3:112267600-112278200	Weak transcription	Ovary	ovary
25	chr3:112267600-112278600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr3:112267600-112279600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr3:112267800-112278200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr3:112267800-112278200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:112267800-112278200	Weak transcription	Fetal Brain Female	brain
30	chr3:112267800-112278400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr3:112267800-112278400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr3:112267800-112278400	Weak transcription	NH-A	brain
33	chr3:112268000-112278200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:112268000-112278200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr3:112268000-112278200	Weak transcription	Fetal Lung	lung
36	chr3:112268000-112278200	Weak transcription	Osteobl	bone
37	chr3:112268200-112278000	Weak transcription	Brain Germinal Matrix	brain
38	chr3:112268600-112278400	Weak transcription	Placenta	Placenta
39	chr3:112270200-112277800	Weak transcription	Small Intestine	intestine
40	chr3:112270200-112278200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr3:112270200-112278200	Weak transcription	HSMM	muscle
42	chr3:112270200-112278400	Weak transcription	Psoas Muscle	Psoas
43	chr3:112270200-112278400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr3:112270200-112278400	Weak transcription	HMEC	breast
45	chr3:112270200-112279600	Weak transcription	Left Ventricle	heart
46	chr3:112270400-112278000	Weak transcription	HepG2	liver
47	chr3:112274600-112278200	Weak transcription	Liver	Liver
48	chr3:112274600-112278400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:112274800-112278000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr3:112274800-112278200	Weak transcription	Muscle Satellite Cultured Cells	--

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