Variant report

Variant	rs34284082
Chromosome Location	chr3:112327637-112327638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112326392..112328017-chr3:112358236..112359844,2	MCF-7	breast:

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10511317	0.82[EUR][1000 genomes]
rs13059364	0.89[EUR][1000 genomes]
rs13063173	0.89[EUR][1000 genomes]
rs13064534	0.83[EUR][1000 genomes]
rs13065703	0.89[EUR][1000 genomes]
rs13070342	0.89[EUR][1000 genomes]
rs13071492	0.89[EUR][1000 genomes]
rs13080547	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080749	0.89[EUR][1000 genomes]
rs13081201	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13081265	0.85[EUR][1000 genomes]
rs13081632	0.85[EUR][1000 genomes]
rs13088339	0.96[EUR][1000 genomes]
rs13088349	0.96[EUR][1000 genomes]
rs13088467	0.96[EUR][1000 genomes]
rs13094161	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13094649	0.89[EUR][1000 genomes]
rs13095000	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096943	0.85[EUR][1000 genomes]
rs16845067	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16859661	0.85[EUR][1000 genomes]
rs16859727	0.89[EUR][1000 genomes]
rs16859758	0.89[EUR][1000 genomes]
rs16859775	0.83[ASN][1000 genomes]
rs16859779	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16859787	0.96[EUR][1000 genomes]
rs16859793	0.96[EUR][1000 genomes]
rs2220656	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2705526	0.82[EUR][1000 genomes]
rs28365853	0.96[EUR][1000 genomes]
rs34080815	0.89[EUR][1000 genomes]
rs34139211	0.89[EUR][1000 genomes]
rs34248586	0.89[EUR][1000 genomes]
rs34541731	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34596334	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34597203	0.89[EUR][1000 genomes]
rs34645913	0.89[EUR][1000 genomes]
rs34829517	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34889961	0.89[EUR][1000 genomes]
rs34949685	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34962178	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35240469	0.89[EUR][1000 genomes]
rs35255669	0.96[EUR][1000 genomes]
rs35349986	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35512450	0.89[EUR][1000 genomes]
rs35526995	0.89[EUR][1000 genomes]
rs35529363	0.96[EUR][1000 genomes]
rs35692417	0.96[EUR][1000 genomes]
rs35709173	0.96[EUR][1000 genomes]
rs35725070	0.89[EUR][1000 genomes]
rs35748518	0.89[EUR][1000 genomes]
rs35803911	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35840933	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35931975	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36025914	0.96[EUR][1000 genomes]
rs36045008	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36061184	0.96[EUR][1000 genomes]
rs36146261	0.96[EUR][1000 genomes]
rs36153507	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736269	0.89[EUR][1000 genomes]
rs3736270	0.89[EUR][1000 genomes]
rs3736271	0.89[EUR][1000 genomes]
rs3773698	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3773701	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3773704	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3773706	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3773710	0.96[EUR][1000 genomes]
rs3821684	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55742760	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56662636	0.89[EUR][1000 genomes]
rs56856838	0.89[EUR][1000 genomes]
rs56970524	0.96[EUR][1000 genomes]
rs57346109	0.89[EUR][1000 genomes]
rs58891772	0.89[EUR][1000 genomes]
rs59279185	0.89[EUR][1000 genomes]
rs59858117	0.89[EUR][1000 genomes]
rs60321074	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60646325	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66486470	0.89[EUR][1000 genomes]
rs66698345	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66791711	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66910014	0.89[EUR][1000 genomes]
rs67021100	0.85[EUR][1000 genomes]
rs67204151	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67513863	0.93[EUR][1000 genomes]
rs67940544	0.96[EUR][1000 genomes]
rs67944354	0.89[EUR][1000 genomes]
rs71317505	0.82[EUR][1000 genomes]
rs71317506	0.85[EUR][1000 genomes]
rs71317507	0.89[EUR][1000 genomes]
rs71317508	0.89[EUR][1000 genomes]
rs71317510	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724125	0.96[EUR][1000 genomes]
rs73229350	0.89[EUR][1000 genomes]
rs73229353	0.89[EUR][1000 genomes]
rs73229398	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs958935	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877342	chr3:112185025-112332629	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv591301	chr3:112252532-112332629	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112282000-112330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:112282000-112330600	Weak transcription	Esophagus	oesophagus
3	chr3:112282400-112340000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:112298800-112335200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:112300200-112331000	Weak transcription	Lung	lung
6	chr3:112300200-112334000	Weak transcription	Fetal Stomach	stomach
7	chr3:112305400-112330400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:112305800-112334800	Weak transcription	Aorta	Aorta
9	chr3:112307400-112329000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:112311600-112330600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:112311600-112331000	Weak transcription	Psoas Muscle	Psoas
12	chr3:112312400-112331000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:112312600-112330400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:112312600-112346200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:112312600-112347200	Weak transcription	Fetal Intestine Large	intestine
16	chr3:112316200-112342800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:112316400-112333600	Weak transcription	A549	lung
18	chr3:112316600-112337600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:112317600-112328600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:112318000-112341800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:112318200-112330600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:112322200-112337200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:112322800-112329400	Strong transcription	Colon Smooth Muscle	Colon
24	chr3:112323400-112332400	Strong transcription	Placenta Amnion	Placenta Amnion
25	chr3:112323800-112334600	Weak transcription	Fetal Muscle Leg	muscle
26	chr3:112324400-112331200	Strong transcription	Adipose Nuclei	Adipose
27	chr3:112324600-112331800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:112324800-112328400	Strong transcription	Osteobl	bone
29	chr3:112324800-112328600	Strong transcription	NHDF-Ad	bronchial
30	chr3:112324800-112329000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:112324800-112330600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:112325000-112327800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:112325000-112328600	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr3:112325000-112329400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:112325200-112328200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:112325200-112328600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:112325200-112329800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:112325400-112328600	Strong transcription	HSMM	muscle
39	chr3:112325400-112329400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:112325600-112328800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:112325600-112330400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr3:112326000-112333400	Weak transcription	Ovary	ovary
43	chr3:112326200-112329200	Weak transcription	HSMMtube	muscle
44	chr3:112326200-112330000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr3:112326800-112327800	Enhancers	Fetal Kidney	kidney
46	chr3:112326800-112328600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr3:112327200-112330600	Weak transcription	Fetal Heart	heart
48	chr3:112327200-112331200	Weak transcription	HUVEC	blood vessel
49	chr3:112327200-112331600	Weak transcription	Fetal Lung	lung
50	chr3:112327400-112328800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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