Variant report

Variant	rs13101128
Chromosome Location	chr3:28345303-28345304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:28320610..28323454-chr3:28344895..28347775,2	K562	blood:
2	chr3:28330851..28335803-chr3:28340570..28345595,8	K562	blood:
3	chr3:28342955..28345727-chr3:28352086..28355047,3	K562	blood:

Variant related genes	Relation type
ENSG00000187118	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11706332	0.81[ASN][1000 genomes]
rs11709034	0.91[CEU][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11921943	1.00[CEU][hapmap]
rs13065010	0.84[EUR][1000 genomes]
rs13085075	0.96[CEU][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095675	0.92[CEU][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1585211	0.96[CEU][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1606393	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs17638991	0.82[ASN][1000 genomes]
rs17695765	0.82[ASN][1000 genomes]
rs1870259	0.87[CEU][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1975828	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1975829	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2018136	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2168799	0.96[CEU][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34574968	0.82[ASN][1000 genomes]
rs4327342	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4585155	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4680750	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4680909	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4680910	0.83[ASN][1000 genomes]
rs4680913	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62251105	0.82[ASN][1000 genomes]
rs6762636	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6763313	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6771057	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6803692	0.91[CEU][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7639750	0.96[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7641491	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649498	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7651883	0.96[CEU][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs952888	0.81[ASN][1000 genomes]
rs9843464	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28314400-28365400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:28315000-28363000	Weak transcription	A549	lung
3	chr3:28317600-28380000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:28317600-28389400	Weak transcription	Esophagus	oesophagus
5	chr3:28326400-28365400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:28332800-28349000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:28332800-28360000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:28332800-28360200	Weak transcription	Left Ventricle	heart
9	chr3:28332800-28360400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:28332800-28362400	Weak transcription	Primary B cells from cord blood	blood
11	chr3:28332800-28365200	Weak transcription	HSMMtube	muscle
12	chr3:28332800-28365400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:28333400-28349000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:28333600-28348800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:28333800-28349200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:28336800-28359400	Weak transcription	K562	blood
17	chr3:28337200-28365200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr3:28337400-28360400	Weak transcription	Liver	Liver
19	chr3:28337400-28361000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:28337400-28363000	Weak transcription	GM12878-XiMat	blood
21	chr3:28337600-28356600	Weak transcription	Ovary	ovary
22	chr3:28337600-28360200	Weak transcription	Fetal Lung	lung
23	chr3:28337600-28360200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr3:28337600-28361000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:28337800-28348800	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr3:28337800-28355400	Weak transcription	Primary T cells from cord blood	blood
27	chr3:28338000-28359600	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr3:28338000-28360200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:28338000-28360600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:28338200-28364000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr3:28339600-28359200	Weak transcription	Dnd41	blood
32	chr3:28339800-28349000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr3:28340400-28349200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr3:28343800-28350800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr3:28343800-28383800	Weak transcription	Aorta	Aorta
36	chr3:28345200-28345600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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