Variant report

Variant	rs1975828
Chromosome Location	chr3:28421515-28421516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs13065010	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13069839	0.87[ASN][1000 genomes]
rs13070434	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13081520	0.80[ASN][1000 genomes]
rs13085075	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13095675	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13101128	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1585211	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1606393	0.81[EUR][1000 genomes]
rs17357206	0.80[ASN][1000 genomes]
rs17695884	0.82[ASN][1000 genomes]
rs17696025	0.80[ASN][1000 genomes]
rs1870259	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1975829	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2018136	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2168799	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34311197	0.80[ASN][1000 genomes]
rs34796684	0.82[ASN][1000 genomes]
rs35702956	0.82[ASN][1000 genomes]
rs36105900	0.82[ASN][1000 genomes]
rs3762797	0.80[ASN][1000 genomes]
rs4327342	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680750	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4680909	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4680910	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4680913	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62251131	0.82[ASN][1000 genomes]
rs62251134	0.82[ASN][1000 genomes]
rs62251138	0.80[ASN][1000 genomes]
rs66733194	0.80[ASN][1000 genomes]
rs6762636	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6763313	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6771057	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788754	0.82[EUR][1000 genomes]
rs6803692	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7639750	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7641491	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7649498	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7650742	0.86[EUR][1000 genomes]
rs7651883	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9843464	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv979765	chr3:28401267-28427998	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28420800-28433000	Weak transcription	Ovary	ovary

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