Variant report

Variant	rs13095675
Chromosome Location	chr3:28402320-28402321
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:28388460..28394013-chr3:28397646..28403545,9	K562	blood:

Variant related genes	Relation type
ENSG00000206559	Chromatin interaction
ENSG00000163512	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs11706332	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs11707705	1.00[CHB][hapmap]
rs11709034	0.81[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap]
rs11712484	1.00[CHB][hapmap]
rs11712489	1.00[CHB][hapmap]
rs11720107	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs11918050	1.00[CHB][hapmap]
rs11921692	1.00[CHB][hapmap]
rs11921943	0.82[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs12107256	0.85[CHB][hapmap]
rs13065010	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13069839	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13070434	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13075840	1.00[CHB][hapmap]
rs13081520	1.00[CHB][hapmap];0.86[CHD][hapmap];0.80[ASN][1000 genomes]
rs13082167	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs13083544	0.85[CHB][hapmap]
rs13085075	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13087143	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs13087774	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs13088574	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs13090296	0.85[CHB][hapmap]
rs13090439	1.00[CHB][hapmap]
rs13093242	0.85[CHB][hapmap]
rs13095628	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs13101128	0.92[CEU][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1457910	1.00[CHB][hapmap]
rs1585211	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1598846	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs1599826	0.92[CHB][hapmap]
rs1606386	0.92[CHB][hapmap]
rs1606388	0.92[CHB][hapmap]
rs1606393	0.81[CEU][hapmap]
rs1610238	0.85[CHB][hapmap]
rs17021221	0.85[CHB][hapmap]
rs17021306	0.85[CHB][hapmap]
rs17021402	1.00[CHB][hapmap]
rs17357206	1.00[CHB][hapmap];0.86[CHD][hapmap];0.80[ASN][1000 genomes]
rs17638742	0.92[CHB][hapmap]
rs17638991	1.00[CHB][hapmap]
rs17695765	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs17695884	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17696025	1.00[CHB][hapmap];0.86[CHD][hapmap];0.80[ASN][1000 genomes]
rs17696459	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs17696783	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs1870259	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1975828	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1975829	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2018136	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2168799	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34311197	0.80[ASN][1000 genomes]
rs34796684	0.82[ASN][1000 genomes]
rs35702956	0.82[ASN][1000 genomes]
rs36105900	1.00[CHB][hapmap];0.85[CHD][hapmap];0.82[ASN][1000 genomes]
rs3762797	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs4327342	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4452283	1.00[CHB][hapmap]
rs4585155	0.81[CEU][hapmap]
rs4680750	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680909	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4680910	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4680913	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62251131	0.82[ASN][1000 genomes]
rs62251134	0.82[ASN][1000 genomes]
rs62251138	0.80[ASN][1000 genomes]
rs66733194	0.80[ASN][1000 genomes]
rs6762636	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6763313	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771057	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6771460	1.00[CHB][hapmap]
rs6788754	0.88[AMR][1000 genomes]
rs6803692	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7434193	1.00[CHB][hapmap]
rs7639750	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7641491	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7643191	1.00[CHB][hapmap]
rs7649498	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650742	0.80[EUR][1000 genomes]
rs7651883	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs969443	1.00[CHB][hapmap]
rs9843464	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv979765	chr3:28401267-28427998	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28393800-28412200	Weak transcription	Pancreas	Pancrea

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