Variant report

Variant	rs17021221
Chromosome Location	chr3:28235831-28235832
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:28229816..28231619-chr3:28235238..28237860,2	K562	blood:
2	chr3:28232370..28234872-chr3:28235014..28237242,2	K562	blood:
3	chr3:28235643..28237706-chr3:28280432..28283364,3	K562	blood:
4	chr3:28235291..28239535-chr3:28281100..28284178,4	K562	blood:

Variant related genes	Relation type
ENSG00000187118	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11706332	0.85[CHB][hapmap]
rs11708424	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11921943	0.85[CHB][hapmap]
rs12107256	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs13081520	0.85[CHB][hapmap]
rs13083544	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13085075	0.85[CHB][hapmap]
rs13085245	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13090296	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13090439	0.85[CHB][hapmap]
rs13092618	0.84[ASN][1000 genomes]
rs13093242	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13095675	0.85[CHB][hapmap]
rs1599826	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1606386	0.93[CHB][hapmap]
rs1606388	0.92[CHB][hapmap]
rs1610238	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17021306	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs17357206	0.85[CHB][hapmap]
rs17638742	0.92[CHB][hapmap]
rs17638991	0.85[CHB][hapmap]
rs17695765	0.85[CHB][hapmap]
rs17695884	0.85[CHB][hapmap]
rs17696025	0.85[CHB][hapmap]
rs1870259	0.84[CHB][hapmap]
rs2016948	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34017994	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34419916	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34681294	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34748842	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35217335	0.88[ASN][1000 genomes]
rs35232922	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35439056	0.85[ASN][1000 genomes]
rs35460328	0.88[ASN][1000 genomes]
rs35496780	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35530532	0.88[ASN][1000 genomes]
rs35565264	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35575798	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35678778	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35768817	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35937120	0.81[ASN][1000 genomes]
rs36105900	0.85[CHB][hapmap]
rs3762797	0.85[CHB][hapmap]
rs4680909	0.85[CHB][hapmap]
rs4680913	0.85[CHB][hapmap]
rs56946005	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66502736	0.87[ASN][1000 genomes]
rs66716911	0.88[ASN][1000 genomes]
rs67023418	0.88[ASN][1000 genomes]
rs6771057	0.85[CHB][hapmap]
rs6771460	0.85[CHB][hapmap]
rs68097246	0.85[ASN][1000 genomes]
rs7639750	0.85[CHB][hapmap]
rs7641491	0.85[CHB][hapmap]
rs7649498	0.85[CHB][hapmap]
rs9843464	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876648	chr3:28060456-28280965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv998002	chr3:28208676-28252031	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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