Variant report

Variant	rs35937120
Chromosome Location	chr3:28319406-28319407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:28308373..28310438-chr3:28316612..28319409,2	K562	blood:
2	chr3:28308378..28310438-chr3:28317239..28319409,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11706332	0.84[ASN][1000 genomes]
rs11708424	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12107256	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13083544	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13085245	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13090296	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13092618	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13093242	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13099152	0.89[ASN][1000 genomes]
rs1599826	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1606386	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1606388	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1610238	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17021221	0.81[ASN][1000 genomes]
rs17021306	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17638742	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17638782	0.89[ASN][1000 genomes]
rs17638991	0.85[ASN][1000 genomes]
rs17695765	0.83[ASN][1000 genomes]
rs2016948	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34017994	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34419916	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34541614	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34574968	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34748842	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35217335	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35232922	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35439056	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35460328	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35496780	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35530532	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35565264	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35575798	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35678778	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35736614	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35768817	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35845822	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4522735	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56946005	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62251105	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62251108	0.83[ASN][1000 genomes]
rs62252069	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs66502736	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66716911	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67023418	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68097246	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71087683	0.89[ASN][1000 genomes]
rs7635383	0.87[ASN][1000 genomes]
rs7650831	0.82[ASN][1000 genomes]
rs952888	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28284400-28321800	Weak transcription	NHLF	lung
2	chr3:28303400-28322200	Weak transcription	Small Intestine	intestine
3	chr3:28303600-28340600	Weak transcription	NHEK	skin
4	chr3:28303800-28320800	Weak transcription	Placenta	Placenta
5	chr3:28304200-28332400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:28305600-28322600	Weak transcription	Osteobl	bone
7	chr3:28306400-28332400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:28306600-28335800	Weak transcription	Hela-S3	cervix
9	chr3:28309000-28336600	Weak transcription	HUVEC	blood vessel
10	chr3:28310400-28321200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr3:28313400-28322800	Weak transcription	Colonic Mucosa	Colon
12	chr3:28314200-28332400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:28314400-28332400	Weak transcription	Ovary	ovary
14	chr3:28314400-28365400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:28314600-28332600	Weak transcription	Left Ventricle	heart
16	chr3:28314800-28343400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:28315000-28332400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:28315000-28333000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:28315000-28363000	Weak transcription	A549	lung
20	chr3:28315200-28332200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:28315400-28320800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:28315600-28325800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr3:28315600-28326400	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr3:28315600-28332400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:28315600-28332400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr3:28315600-28332400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr3:28315800-28320600	Weak transcription	Colon Smooth Muscle	Colon
28	chr3:28315800-28321200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:28315800-28332200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr3:28315800-28332200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr3:28315800-28332400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr3:28316000-28322200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:28316000-28332000	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr3:28316200-28321000	Weak transcription	Psoas Muscle	Psoas
35	chr3:28316200-28333200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr3:28316400-28322200	Weak transcription	Fetal Brain Female	brain
37	chr3:28316400-28332000	Weak transcription	K562	blood
38	chr3:28316600-28319800	Weak transcription	Brain Substantia Nigra	brain
39	chr3:28317000-28328400	Weak transcription	Brain Anterior Caudate	brain
40	chr3:28317200-28332200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr3:28317400-28320600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr3:28317400-28320600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr3:28317400-28332000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr3:28317400-28332400	Weak transcription	HSMM	muscle
45	chr3:28317400-28337200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr3:28317600-28319800	Weak transcription	Primary B cells from cord blood	blood
47	chr3:28317600-28320000	Weak transcription	Liver	Liver
48	chr3:28317600-28320400	Weak transcription	Adipose Nuclei	Adipose
49	chr3:28317600-28320600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:28317600-28321200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links