Variant report

Variant	rs35217335
Chromosome Location	chr3:28311020-28311021
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:27312795..27314332-chr3:28309180..28311236,2	K562	blood:
2	chr3:28309934..28311151-chr3:28327854..28329033,3	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11706332	0.86[ASN][1000 genomes]
rs11708424	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12107256	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13083544	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13085245	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13090296	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13092618	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13093242	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099152	0.89[ASN][1000 genomes]
rs1599826	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1606386	0.90[ASN][1000 genomes]
rs1606388	0.85[ASN][1000 genomes]
rs1610238	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17021221	0.88[ASN][1000 genomes]
rs17021306	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17638742	0.89[ASN][1000 genomes]
rs17638782	0.89[ASN][1000 genomes]
rs17638991	0.88[ASN][1000 genomes]
rs17695765	0.85[ASN][1000 genomes]
rs2016948	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34017994	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34419916	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541614	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34574968	0.88[ASN][1000 genomes]
rs34681294	0.86[ASN][1000 genomes]
rs34748842	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35232922	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35439056	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35460328	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35496780	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35530532	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35565264	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35575798	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35678778	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35736614	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35768817	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35845822	0.89[ASN][1000 genomes]
rs35937120	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4522735	0.89[ASN][1000 genomes]
rs56946005	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62251105	0.88[ASN][1000 genomes]
rs62251108	0.85[ASN][1000 genomes]
rs62252069	0.89[ASN][1000 genomes]
rs66502736	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66716911	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67023418	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68097246	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71087683	0.89[ASN][1000 genomes]
rs7635383	0.90[ASN][1000 genomes]
rs7650831	0.84[ASN][1000 genomes]
rs952888	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28283800-28311400	Weak transcription	Lung	lung
2	chr3:28284000-28313800	Weak transcription	Ovary	ovary
3	chr3:28284000-28317200	Weak transcription	Gastric	stomach
4	chr3:28284400-28312600	Weak transcription	Fetal Lung	lung
5	chr3:28284400-28321800	Weak transcription	NHLF	lung
6	chr3:28284600-28311200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:28285600-28315400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:28287600-28317000	Weak transcription	Pancreas	Pancrea
9	chr3:28288600-28311200	Weak transcription	Esophagus	oesophagus
10	chr3:28291400-28311200	Weak transcription	Aorta	Aorta
11	chr3:28293600-28311200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:28294200-28314400	Weak transcription	HepG2	liver
13	chr3:28294400-28313800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:28294400-28314200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:28294600-28313800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr3:28294800-28313800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:28294800-28316400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:28295000-28312200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:28295600-28313800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr3:28295600-28318200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr3:28300000-28313800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:28300600-28311400	Weak transcription	Brain Anterior Caudate	brain
23	chr3:28301000-28313800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr3:28301800-28314000	Weak transcription	Brain Angular Gyrus	brain
25	chr3:28302200-28313800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr3:28302600-28313800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr3:28303000-28314600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr3:28303000-28316800	Weak transcription	Right Ventricle	heart
29	chr3:28303400-28322200	Weak transcription	Small Intestine	intestine
30	chr3:28303600-28313800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr3:28303600-28340600	Weak transcription	NHEK	skin
32	chr3:28303800-28311200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr3:28303800-28311400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr3:28303800-28320800	Weak transcription	Placenta	Placenta
35	chr3:28304000-28313000	Weak transcription	Fetal Kidney	kidney
36	chr3:28304000-28314000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr3:28304200-28313800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:28304200-28332400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:28304600-28313200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr3:28304600-28313800	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr3:28305200-28311600	Weak transcription	NH-A	brain
42	chr3:28305600-28322600	Weak transcription	Osteobl	bone
43	chr3:28305800-28311400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr3:28305800-28313400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr3:28306200-28311200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr3:28306200-28311200	Weak transcription	Left Ventricle	heart
47	chr3:28306200-28311400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:28306200-28311400	Weak transcription	Adipose Nuclei	Adipose
49	chr3:28306200-28314000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr3:28306200-28316600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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