Variant report

Variant	rs34681294
Chromosome Location	chr3:28229522-28229523
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11708424	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12107256	0.86[ASN][1000 genomes]
rs13083544	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13085245	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13090296	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13092618	0.83[ASN][1000 genomes]
rs13093242	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1599826	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1610238	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17021221	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17021306	0.86[ASN][1000 genomes]
rs2016948	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34017994	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34419916	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34748842	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35217335	0.86[ASN][1000 genomes]
rs35232922	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35439056	0.84[ASN][1000 genomes]
rs35460328	0.86[ASN][1000 genomes]
rs35496780	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35530532	0.86[ASN][1000 genomes]
rs35565264	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35575798	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35678778	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35768817	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56946005	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66502736	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66716911	0.86[ASN][1000 genomes]
rs67023418	0.86[ASN][1000 genomes]
rs68097246	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876648	chr3:28060456-28280965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv998002	chr3:28208676-28252031	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28229000-28231800	Weak transcription	Muscle Satellite Cultured Cells	--

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