Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13065010	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13069839	0.87[ASN][1000 genomes]
rs13070434	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13085075	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13095675	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13101128	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1585211	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1870259	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1975828	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1975829	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2018136	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2168799	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4680750	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4680909	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4680910	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4680913	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6762636	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6763313	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6771057	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6803692	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7639750	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7641491	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7649498	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7651883	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9843464	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28391600-28397800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:28391600-28398600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr3:28392000-28397200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:28393800-28412200	Weak transcription	Pancreas	Pancrea
5	chr3:28395600-28397200	Weak transcription	HSMM	muscle
6	chr3:28395600-28397400	Weak transcription	NHDF-Ad	bronchial
7	chr3:28395600-28398000	Weak transcription	Left Ventricle	heart
8	chr3:28395800-28397400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:28396000-28397400	Weak transcription	Duodenum Smooth Muscle	Duodenum

Quick Search: