Variant report

Variant	rs13109709
Chromosome Location	chr4:107451365-107451366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13101345	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13120907	0.89[ASN][1000 genomes]
rs13147917	0.88[EUR][1000 genomes]
rs1357249	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1464498	0.96[ASN][1000 genomes]
rs1464499	0.86[EUR][1000 genomes]
rs1522217	0.96[ASN][1000 genomes]
rs1522219	0.94[ASN][1000 genomes]
rs1522220	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1522221	0.94[ASN][1000 genomes]
rs1522222	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1818785	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1818786	0.86[EUR][1000 genomes]
rs2204100	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2461472	0.96[ASN][1000 genomes]
rs2648027	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2648028	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2648049	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2648070	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2686310	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2686312	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2691807	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2903418	0.95[ASN][1000 genomes]
rs3932349	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4612008	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56392925	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6533256	0.94[ASN][1000 genomes]
rs7658722	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7672970	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs769169	0.83[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107450000-107452400	Enhancers	HMEC	breast
2	chr4:107450200-107452800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:107450600-107452400	Enhancers	NHEK	skin
4	chr4:107450600-107452600	Enhancers	HUVEC	blood vessel
5	chr4:107450800-107451400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:107450800-107451400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:107450800-107451400	Enhancers	NH-A	brain
8	chr4:107450800-107451800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:107450800-107451800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:107450800-107452200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:107450800-107452800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:107450800-107452800	Enhancers	NHDF-Ad	bronchial
13	chr4:107450800-107453600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links