Variant report

Variant	rs13119910
Chromosome Location	chr4:100859368-100859369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100858344..100860711-chr4:100861423..100864092,3	K562	blood:
2	chr4:100855576..100858012-chr4:100858356..100861147,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13141071	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35482926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35674039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35856091	1.00[AFR][1000 genomes]
rs56121018	1.00[AFR][1000 genomes]
rs56271274	1.00[AFR][1000 genomes]
rs71614619	1.00[AFR][1000 genomes]
rs919131	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879661	chr4:100805207-100869635	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv879662	chr4:100849466-100876648	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
3	esv1801295	chr4:100856441-100864204	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100816000-100867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:100816000-100867000	Weak transcription	Lung	lung
3	chr4:100816200-100866200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:100820000-100866200	Weak transcription	Fetal Heart	heart
5	chr4:100824000-100865800	Weak transcription	Psoas Muscle	Psoas
6	chr4:100824400-100866000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:100828800-100866200	Weak transcription	Stomach Mucosa	stomach
8	chr4:100829200-100866600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:100829600-100866200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:100840000-100862600	Weak transcription	K562	blood
11	chr4:100840200-100864600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:100840200-100865800	Weak transcription	Ovary	ovary
13	chr4:100840200-100866000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:100840200-100867000	Weak transcription	Gastric	stomach
15	chr4:100840400-100864600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:100840400-100866800	Weak transcription	Aorta	Aorta
17	chr4:100840400-100867000	Weak transcription	Esophagus	oesophagus
18	chr4:100840600-100862200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr4:100847800-100864600	Weak transcription	Hela-S3	cervix
20	chr4:100847800-100866200	Weak transcription	HSMMtube	muscle
21	chr4:100848400-100866200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr4:100849600-100864800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr4:100850400-100864800	Weak transcription	HUVEC	blood vessel
24	chr4:100852000-100865400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr4:100852200-100866000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:100852400-100863400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr4:100853200-100859800	ZNF genes & repeats	GM12878-XiMat	blood
28	chr4:100855400-100861400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr4:100855800-100864600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr4:100855800-100866000	Weak transcription	Colonic Mucosa	Colon
31	chr4:100856200-100859800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:100856200-100866000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr4:100856800-100859400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr4:100856800-100859800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr4:100856800-100860600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:100856800-100863400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr4:100856800-100864000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr4:100856800-100865400	Weak transcription	Brain Angular Gyrus	brain
39	chr4:100856800-100866000	Weak transcription	Fetal Brain Male	brain
40	chr4:100856800-100866200	Weak transcription	NH-A	brain
41	chr4:100857000-100859400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr4:100857000-100862200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:100857000-100862200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr4:100857000-100862200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr4:100857000-100864200	Weak transcription	HepG2	liver
46	chr4:100857000-100864400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr4:100857000-100864800	Weak transcription	Colon Smooth Muscle	Colon
48	chr4:100857000-100866000	Weak transcription	Stomach Smooth Muscle	stomach
49	chr4:100857000-100866200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr4:100857200-100860000	Strong transcription	Liver	Liver

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