Variant report

Variant	rs13141071
Chromosome Location	chr4:100815204-100815205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:100813266..100817175-chr4:100865527..100871657,11	MCF-7	breast:
2	chr4:100814600..100817376-chr4:100869817..100872742,4	MCF-7	breast:
3	chr17:57970213..57970964-chr4:100815105..100815985,2	MCF-7	breast:
4	chr4:100814213..100816552-chr4:100866797..100868818,3	MCF-7	breast:
5	chr4:100737221..100739559-chr4:100813734..100816080,3	MCF-7	breast:
6	chr4:100810623..100827791-chr4:100865444..100874425,55	K562	blood:
7	chr4:100799869..100822436-chr4:100866015..100873106,54	K562	blood:
8	chr4:100482462..100485382-chr4:100814090..100816679,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164031	Chromatin interaction
ENSG00000164032	Chromatin interaction
ENSG00000108423	Chromatin interaction
ENSG00000108443	Chromatin interaction
ENSG00000145331	Chromatin interaction
ENSG00000138823	Chromatin interaction
ENSG00000070190	Chromatin interaction
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13119910	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35482926	1.00[AFR][1000 genomes]
rs35674039	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35856091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36072554	0.85[EUR][1000 genomes]
rs56121018	1.00[AFR][1000 genomes]
rs56271274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71614619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs919131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879661	chr4:100805207-100869635	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100813200-100816600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:100814000-100816200	Active TSS	HSMM	muscle
3	chr4:100814200-100815400	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr4:100814200-100816000	Active TSS	HSMMtube	muscle
5	chr4:100814200-100816200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:100814200-100816200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:100814200-100816200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:100814200-100816200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:100814200-100816200	Active TSS	A549	lung
10	chr4:100814400-100815400	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr4:100814400-100815400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:100814400-100815400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:100814400-100816000	Active TSS	Pancreas	Pancrea
14	chr4:100814400-100816000	Active TSS	NHLF	lung
15	chr4:100814400-100816200	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr4:100814400-100816400	Active TSS	H1 Cell Line	embryonic stem cell
17	chr4:100814400-100816400	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr4:100814400-100816400	Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr4:100814400-100816600	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr4:100814600-100815400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr4:100814600-100815400	Flanking Active TSS	Primary B cells from cord blood	blood
22	chr4:100814600-100815400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr4:100814600-100815400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr4:100814600-100815400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr4:100814600-100815400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:100814600-100815800	Active TSS	HMEC	breast
27	chr4:100814600-100816000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr4:100814600-100816000	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr4:100814600-100816000	Active TSS	Fetal Intestine Large	intestine
30	chr4:100814600-100816000	Active TSS	NHDF-Ad	bronchial
31	chr4:100814600-100816200	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr4:100814600-100816200	Active TSS	Muscle Satellite Cultured Cells	--
33	chr4:100814600-100816200	Active TSS	Aorta	Aorta
34	chr4:100814600-100816200	Active TSS	Fetal Muscle Trunk	muscle
35	chr4:100814600-100816200	Active TSS	Ovary	ovary
36	chr4:100814600-100816200	Active TSS	Right Atrium	heart
37	chr4:100814600-100816400	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr4:100814600-100816400	Active TSS	H9 Cell Line	embryonic stem cell
39	chr4:100814600-100816400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:100814600-100816400	Active TSS	Psoas Muscle	Psoas
41	chr4:100814800-100815400	Flanking Active TSS	Primary B cells from peripheral blood	blood
42	chr4:100814800-100815400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
43	chr4:100814800-100815400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
44	chr4:100814800-100815600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr4:100814800-100815600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
46	chr4:100814800-100815600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
47	chr4:100814800-100815800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:100814800-100815800	Active TSS	K562	blood
49	chr4:100814800-100815800	Active TSS	NH-A	brain
50	chr4:100814800-100815800	Active TSS	NHEK	skin

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