Variant report

Variant	rs35856091
Chromosome Location	chr4:100730627-100730628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100482505..100484311-chr4:100728147..100731053,2	MCF-7	breast:
2	chr4:100729667..100733158-chr4:100802564..100806778,3	MCF-7	breast:
3	chr4:100729924..100732920-chr4:100868919..100870955,3	K562	blood:
4	chr4:100729962..100733399-chr4:100867213..100870513,5	K562	blood:
5	chr4:100730367..100732782-chr4:100869185..100871899,3	MCF-7	breast:
6	chr4:100506318..100508335-chr4:100729630..100732239,2	MCF-7	breast:
7	chr4:100728801..100731291-chr4:100734823..100736521,2	K562	blood:
8	chr4:100482002..100484856-chr4:100726291..100730925,4	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000145331	Chromatin interaction
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction
ENSG00000164031	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13119910	1.00[AFR][1000 genomes]
rs13141071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35482926	1.00[AFR][1000 genomes]
rs35674039	1.00[AFR][1000 genomes]
rs56271274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71614619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs919131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100723200-100741000	Weak transcription	Right Atrium	heart
2	chr4:100727600-100738000	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:100729400-100731000	Enhancers	Fetal Lung	lung
4	chr4:100729600-100731400	Enhancers	Primary B cells from peripheral blood	blood
5	chr4:100729800-100733000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:100730200-100731400	Enhancers	Fetal Brain Female	brain
7	chr4:100730600-100731000	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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