Variant report

Variant	rs13131285
Chromosome Location	chr4:15618064-15618065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1154577	0.84[ASN][1000 genomes]
rs13106528	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114491	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13122812	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127507	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131119	0.84[ASN][1000 genomes]
rs13131606	0.81[ASN][1000 genomes]
rs13138894	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141724	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13144428	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468735	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468736	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892143	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892156	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476670	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476831	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041672	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041673	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3182730	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155734	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34427409	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34599140	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34831330	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34924677	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35151159	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35196224	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35258636	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35309200	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35461787	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35724720	0.84[ASN][1000 genomes]
rs36012186	0.84[ASN][1000 genomes]
rs4267734	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4326008	1.00[ASN][1000 genomes]
rs4613560	1.00[ASN][1000 genomes]
rs57275698	0.84[ASN][1000 genomes]
rs6449150	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66472670	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67047740	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67089836	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67222859	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67224550	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825051	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825815	0.84[ASN][1000 genomes]
rs6834359	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237149	0.84[ASN][1000 genomes]
rs73237151	0.84[ASN][1000 genomes]
rs7699180	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv518830	chr4:15610771-15672200	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv521183	chr4:15610771-15692136	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv3376437	chr4:15613963-15626944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3464784	chr4:15613969-15626901	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3464785	chr4:15613969-15626901	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15537400-15621000	Weak transcription	Hela-S3	cervix
2	chr4:15565400-15621400	Weak transcription	Esophagus	oesophagus
3	chr4:15568400-15655600	Weak transcription	Gastric	stomach
4	chr4:15589800-15621400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:15590600-15626400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:15593800-15621200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:15597200-15620600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr4:15600600-15620800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:15600800-15653000	Weak transcription	Colonic Mucosa	Colon
10	chr4:15601000-15651600	Weak transcription	Small Intestine	intestine
11	chr4:15602000-15626000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:15602200-15621200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:15602600-15655600	Weak transcription	Pancreas	Pancrea
14	chr4:15603000-15624400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:15603800-15626800	Weak transcription	NHLF	lung
16	chr4:15605400-15625800	Weak transcription	HMEC	breast
17	chr4:15605600-15620400	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:15605600-15624400	Weak transcription	K562	blood
19	chr4:15605800-15618400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr4:15605800-15621000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:15605800-15650200	Weak transcription	Stomach Mucosa	stomach
22	chr4:15606000-15621600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr4:15606000-15633800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:15606800-15620600	Weak transcription	Adipose Nuclei	Adipose
25	chr4:15607000-15620800	Weak transcription	A549	lung
26	chr4:15607200-15621200	Weak transcription	HUVEC	blood vessel
27	chr4:15607400-15620800	Weak transcription	HepG2	liver
28	chr4:15607400-15621200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:15607600-15621000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr4:15610000-15621400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr4:15610400-15619600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr4:15610600-15620400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr4:15612000-15623200	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr4:15612800-15625200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr4:15613200-15621200	Weak transcription	Osteobl	bone
36	chr4:15613400-15620600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr4:15613400-15620600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr4:15613400-15620800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr4:15613400-15623000	Weak transcription	HSMM	muscle
40	chr4:15613400-15625800	Weak transcription	NH-A	brain
41	chr4:15613400-15626200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr4:15613400-15635000	Weak transcription	HSMMtube	muscle
43	chr4:15613600-15623000	Weak transcription	NHDF-Ad	bronchial
44	chr4:15613600-15626000	Weak transcription	Placenta	Placenta
45	chr4:15613800-15621400	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr4:15614000-15619200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr4:15614000-15620800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:15614200-15621200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr4:15615200-15618400	Weak transcription	NHEK	skin
50	chr4:15615600-15620200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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