Variant report

Variant	rs6834359
Chromosome Location	chr4:15544476-15544477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15533209..15536881-chr4:15540380..15545720,5	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1154577	0.84[ASN][1000 genomes]
rs13106528	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114491	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13122812	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127507	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131119	0.84[ASN][1000 genomes]
rs13131285	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131606	0.81[ASN][1000 genomes]
rs13138894	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141724	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13144428	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468735	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468736	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892143	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892156	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476670	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476831	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041672	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041673	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3182730	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155734	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34427409	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34599140	1.00[ASN][1000 genomes]
rs34831330	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34924677	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35151159	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35196224	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35258636	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35309200	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35461787	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35724720	0.84[ASN][1000 genomes]
rs36012186	0.84[ASN][1000 genomes]
rs4267734	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4326008	1.00[ASN][1000 genomes]
rs4613560	1.00[ASN][1000 genomes]
rs57275698	0.84[ASN][1000 genomes]
rs6449150	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66472670	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67047740	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67089836	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67222859	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67224550	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825051	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825815	0.84[ASN][1000 genomes]
rs73237149	0.84[ASN][1000 genomes]
rs73237151	0.84[ASN][1000 genomes]
rs7699180	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15487400-15570400	Weak transcription	Psoas Muscle	Psoas
2	chr4:15495600-15559400	Weak transcription	HSMMtube	muscle
3	chr4:15502800-15549200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:15502800-15577600	Weak transcription	Right Ventricle	heart
5	chr4:15508200-15556400	Weak transcription	Colonic Mucosa	Colon
6	chr4:15508800-15545800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:15509200-15564400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:15509600-15553400	Weak transcription	HepG2	liver
9	chr4:15512000-15580000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:15513000-15562400	Weak transcription	Primary B cells from cord blood	blood
11	chr4:15515400-15545200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:15516000-15545600	Weak transcription	Fetal Thymus	thymus
13	chr4:15517800-15551600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr4:15517800-15593600	Weak transcription	HUVEC	blood vessel
15	chr4:15520000-15572400	Weak transcription	Small Intestine	intestine
16	chr4:15520600-15544600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:15520600-15545200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr4:15520600-15553400	Weak transcription	A549	lung
19	chr4:15520800-15545000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:15522200-15544600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr4:15526000-15558200	Weak transcription	Spleen	Spleen
22	chr4:15530200-15556600	Weak transcription	HSMM	muscle
23	chr4:15530800-15554600	Weak transcription	Placenta	Placenta
24	chr4:15530800-15554600	Weak transcription	NH-A	brain
25	chr4:15531200-15545200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr4:15531600-15548600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr4:15533000-15554800	Weak transcription	Fetal Brain Male	brain
28	chr4:15537200-15565000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:15537400-15621000	Weak transcription	Hela-S3	cervix
30	chr4:15537800-15549000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:15538000-15545800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:15538600-15546400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr4:15538600-15548600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr4:15539000-15570400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr4:15539800-15545200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr4:15540000-15555600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr4:15540200-15547000	Weak transcription	Liver	Liver
38	chr4:15540200-15547000	Weak transcription	Gastric	stomach
39	chr4:15540200-15547400	Weak transcription	Thymus	Thymus
40	chr4:15540200-15548200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr4:15540200-15548800	Weak transcription	Primary T cells from cord blood	blood
42	chr4:15540200-15554400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr4:15540200-15554600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr4:15540200-15555400	Weak transcription	NHLF	lung
45	chr4:15540200-15556800	Weak transcription	Brain Hippocampus Middle	brain
46	chr4:15540200-15558200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr4:15540200-15558200	Weak transcription	Brain Angular Gyrus	brain
48	chr4:15540200-15558200	Weak transcription	Brain Anterior Caudate	brain
49	chr4:15540200-15559600	Weak transcription	Esophagus	oesophagus
50	chr4:15540200-15561600	Weak transcription	HMEC	breast

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