Variant report

Variant	rs34924677
Chromosome Location	chr4:15571764-15571765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1154577	0.84[ASN][1000 genomes]
rs13106528	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114491	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13122812	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127507	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131119	0.84[ASN][1000 genomes]
rs13131285	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131606	0.81[ASN][1000 genomes]
rs13138894	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141724	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13144428	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892143	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892156	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476670	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041672	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041673	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3182730	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155734	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34427409	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34599140	1.00[ASN][1000 genomes]
rs34831330	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35151159	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35196224	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35258636	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35309200	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35461787	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35724720	0.84[ASN][1000 genomes]
rs36012186	0.84[ASN][1000 genomes]
rs4267734	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4326008	1.00[ASN][1000 genomes]
rs4613560	1.00[ASN][1000 genomes]
rs57275698	0.84[ASN][1000 genomes]
rs6449150	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66472670	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67047740	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67089836	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67222859	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67224550	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825051	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825815	0.84[ASN][1000 genomes]
rs6834359	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237149	0.84[ASN][1000 genomes]
rs73237151	0.84[ASN][1000 genomes]
rs7699180	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15502800-15577600	Weak transcription	Right Ventricle	heart
2	chr4:15512000-15580000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:15517800-15593600	Weak transcription	HUVEC	blood vessel
4	chr4:15520000-15572400	Weak transcription	Small Intestine	intestine
5	chr4:15537400-15621000	Weak transcription	Hela-S3	cervix
6	chr4:15544800-15576200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:15545000-15575600	Weak transcription	Fetal Heart	heart
8	chr4:15546000-15589600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:15546400-15572600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:15550000-15617800	Weak transcription	Thymus	Thymus
11	chr4:15554000-15572800	Strong transcription	Fetal Brain Female	brain
12	chr4:15554600-15601400	Weak transcription	A549	lung
13	chr4:15555800-15589400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:15556000-15603200	Weak transcription	Fetal Thymus	thymus
15	chr4:15558400-15574600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:15559600-15579000	Strong transcription	Fetal Muscle Trunk	muscle
17	chr4:15560200-15571800	Weak transcription	HepG2	liver
18	chr4:15560200-15577400	Weak transcription	HSMMtube	muscle
19	chr4:15560200-15580800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr4:15560400-15572000	Weak transcription	Stomach Mucosa	stomach
21	chr4:15561400-15572400	Strong transcription	Fetal Muscle Leg	muscle
22	chr4:15561600-15572600	Strong transcription	Fetal Stomach	stomach
23	chr4:15561800-15572400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:15561800-15572400	Strong transcription	Ovary	ovary
25	chr4:15562000-15573400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:15562400-15572400	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr4:15562400-15573000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:15562600-15573000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:15562600-15574800	Strong transcription	Brain Germinal Matrix	brain
30	chr4:15563200-15572200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:15563600-15572200	Strong transcription	NHLF	lung
32	chr4:15563600-15576600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr4:15563800-15572800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:15563800-15573200	Strong transcription	Fetal Intestine Small	intestine
35	chr4:15564000-15572200	Strong transcription	Adipose Nuclei	Adipose
36	chr4:15564000-15572200	Strong transcription	Liver	Liver
37	chr4:15564000-15572200	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr4:15564000-15600600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr4:15564200-15572200	Strong transcription	Fetal Intestine Large	intestine
40	chr4:15564200-15573200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:15564200-15574200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr4:15564400-15572200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:15564400-15573200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:15564400-15603200	Weak transcription	HMEC	breast
45	chr4:15564600-15572200	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr4:15564600-15572200	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr4:15564600-15603600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr4:15565000-15571800	Strong transcription	Brain Anterior Caudate	brain
49	chr4:15565000-15572200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr4:15565000-15572200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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