Variant report

Variant	rs35196224
Chromosome Location	chr4:15573533-15573534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1154577	0.84[ASN][1000 genomes]
rs13106528	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114491	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13122812	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127507	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131119	0.84[ASN][1000 genomes]
rs13131285	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131606	0.81[ASN][1000 genomes]
rs13138894	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141724	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13144428	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468735	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468736	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892143	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892156	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476670	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476831	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041672	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041673	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3182730	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155734	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34427409	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34599140	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34831330	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34924677	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35151159	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35258636	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35309200	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35461787	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35724720	0.84[ASN][1000 genomes]
rs36012186	0.84[ASN][1000 genomes]
rs4267734	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4326008	1.00[ASN][1000 genomes]
rs4613560	1.00[ASN][1000 genomes]
rs57275698	0.84[ASN][1000 genomes]
rs6449150	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66472670	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67047740	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67089836	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67222859	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67224550	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825051	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825815	0.84[ASN][1000 genomes]
rs6834359	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237149	0.84[ASN][1000 genomes]
rs73237151	0.84[ASN][1000 genomes]
rs7699180	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15502800-15577600	Weak transcription	Right Ventricle	heart
2	chr4:15512000-15580000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:15517800-15593600	Weak transcription	HUVEC	blood vessel
4	chr4:15537400-15621000	Weak transcription	Hela-S3	cervix
5	chr4:15544800-15576200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:15545000-15575600	Weak transcription	Fetal Heart	heart
7	chr4:15546000-15589600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:15550000-15617800	Weak transcription	Thymus	Thymus
9	chr4:15554600-15601400	Weak transcription	A549	lung
10	chr4:15555800-15589400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:15556000-15603200	Weak transcription	Fetal Thymus	thymus
12	chr4:15558400-15574600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:15559600-15579000	Strong transcription	Fetal Muscle Trunk	muscle
14	chr4:15560200-15577400	Weak transcription	HSMMtube	muscle
15	chr4:15560200-15580800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:15562600-15574800	Strong transcription	Brain Germinal Matrix	brain
17	chr4:15563600-15576600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr4:15564000-15600600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:15564200-15574200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr4:15564400-15603200	Weak transcription	HMEC	breast
21	chr4:15564600-15603600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr4:15565400-15574800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:15565400-15612600	Weak transcription	Brain Substantia Nigra	brain
24	chr4:15565400-15621400	Weak transcription	Esophagus	oesophagus
25	chr4:15565600-15573600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr4:15565600-15604200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr4:15565600-15611400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:15565800-15605000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr4:15566200-15596800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr4:15566800-15580400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr4:15568400-15655600	Weak transcription	Gastric	stomach
32	chr4:15568600-15589400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:15569000-15574200	Strong transcription	Fetal Lung	lung
34	chr4:15569600-15588600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr4:15569600-15596400	Weak transcription	NHDF-Ad	bronchial
36	chr4:15569600-15603600	Weak transcription	Spleen	Spleen
37	chr4:15569600-15604200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr4:15570200-15601800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr4:15570600-15575400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr4:15570600-15577600	Weak transcription	Aorta	Aorta
41	chr4:15570600-15588200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr4:15570600-15602000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:15570600-15602000	Weak transcription	Pancreas	Pancrea
44	chr4:15570800-15582000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr4:15570800-15588800	Weak transcription	Psoas Muscle	Psoas
46	chr4:15570800-15589600	Weak transcription	Lung	lung
47	chr4:15571000-15578200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr4:15571000-15597200	Weak transcription	Brain Hippocampus Middle	brain
49	chr4:15571200-15574000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:15571200-15576200	Weak transcription	Fetal Kidney	kidney

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