Variant report

Variant	rs13137095
Chromosome Location	chr4:149205461-149205462
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149205433..149206356-chr4:149335966..149337295,4	MCF-7	breast:
2	chr4:149205446..149206306-chr4:149625053..149625721,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11099689	0.86[EUR][1000 genomes]
rs11730274	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs11733930	0.95[CEU][hapmap];0.91[CHB][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11735947	0.91[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs12512126	0.95[CEU][hapmap];0.91[CHB][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12640639	0.86[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs12647354	0.90[ASN][1000 genomes]
rs13103641	0.90[ASN][1000 genomes]
rs13104051	0.90[ASN][1000 genomes]
rs13105361	0.91[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs13119790	0.88[ASN][1000 genomes]
rs13138913	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13147775	0.94[CEU][hapmap];0.90[CHB][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13148853	0.94[CEU][hapmap];0.90[CHB][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1429914	0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs17620775	0.90[ASN][1000 genomes]
rs17620822	0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs2356395	0.86[EUR][1000 genomes]
rs34279352	0.82[ASN][1000 genomes]
rs34636256	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3846321	0.91[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs3887856	0.91[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs3910046	0.91[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs4083100	0.88[ASN][1000 genomes]
rs4087963	0.94[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66469272	0.87[ASN][1000 genomes]
rs67343083	0.82[ASN][1000 genomes]
rs6854097	0.85[EUR][1000 genomes]
rs765491	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149192400-149209400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:149194400-149216400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr4:149195200-149207600	Weak transcription	Brain Angular Gyrus	brain
4	chr4:149196800-149209600	Weak transcription	Pancreas	Pancrea
5	chr4:149199600-149209600	Weak transcription	Left Ventricle	heart
6	chr4:149202800-149206600	Enhancers	Fetal Heart	heart
7	chr4:149203200-149206000	Enhancers	Fetal Intestine Large	intestine
8	chr4:149203200-149206400	Enhancers	Right Ventricle	heart
9	chr4:149203600-149205600	Enhancers	Adipose Nuclei	Adipose
10	chr4:149203600-149206400	Enhancers	Fetal Lung	lung
11	chr4:149203600-149206400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr4:149203600-149207000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr4:149203800-149205800	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr4:149203800-149206200	Enhancers	Colon Smooth Muscle	Colon
15	chr4:149204000-149208000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:149204000-149209600	Weak transcription	Aorta	Aorta
17	chr4:149204200-149206200	Enhancers	Duodenum Mucosa	Duodenum
18	chr4:149204200-149208400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:149204200-149209400	Weak transcription	Colonic Mucosa	Colon
20	chr4:149204400-149205600	Weak transcription	Brain Hippocampus Middle	brain
21	chr4:149204400-149206800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr4:149204400-149207400	Weak transcription	Brain Anterior Caudate	brain
23	chr4:149204800-149206400	Enhancers	Ovary	ovary
24	chr4:149204800-149209200	Weak transcription	Small Intestine	intestine
25	chr4:149204800-149209600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr4:149204800-149210800	Weak transcription	Fetal Intestine Small	intestine
27	chr4:149205000-149206200	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr4:149205200-149205600	Enhancers	Rectal Smooth Muscle	rectum
29	chr4:149205200-149206000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr4:149205200-149206400	Enhancers	Fetal Muscle Leg	muscle
31	chr4:149205200-149206400	Enhancers	Psoas Muscle	Psoas
32	chr4:149205200-149206400	Enhancers	Right Atrium	heart
33	chr4:149205200-149207200	Enhancers	Liver	Liver
34	chr4:149205200-149209600	Weak transcription	Stomach Mucosa	stomach
35	chr4:149205400-149205600	Enhancers	Brain Germinal Matrix	brain
36	chr4:149205400-149206400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr4:149205400-149209600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr4:149205400-149209600	Weak transcription	Gastric	stomach

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