Variant report

Variant	rs13119790
Chromosome Location	chr4:149176205-149176206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149172838..149174684-chr4:149174942..149176809,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11730274	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11735947	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12640639	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12647354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13103641	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13104051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13105361	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13137095	0.88[ASN][1000 genomes]
rs13138913	0.94[ASN][1000 genomes]
rs1429914	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17620775	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17620822	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34279352	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35111299	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3846321	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3887856	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3910046	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4083100	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4087963	0.90[ASN][1000 genomes]
rs66469272	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67343083	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs765491	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149160800-149179800	Weak transcription	Psoas Muscle	Psoas
2	chr4:149171000-149183600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr4:149171200-149178800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:149172000-149179400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:149173600-149176600	Weak transcription	Fetal Kidney	kidney
6	chr4:149174400-149176800	Enhancers	Liver	Liver
7	chr4:149174400-149176800	Enhancers	Stomach Mucosa	stomach
8	chr4:149174800-149176400	Enhancers	Fetal Intestine Small	intestine
9	chr4:149174800-149176400	Enhancers	Left Ventricle	heart
10	chr4:149174800-149176400	Enhancers	Pancreas	Pancrea
11	chr4:149175200-149176400	Enhancers	Fetal Intestine Large	intestine
12	chr4:149175200-149177200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr4:149175200-149179600	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:149175400-149176400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:149175400-149176400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:149175400-149177400	Enhancers	HUVEC	blood vessel
17	chr4:149175600-149177200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:149175600-149182400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr4:149175600-149195000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr4:149175800-149179400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr4:149175800-149179600	Weak transcription	Right Ventricle	heart
22	chr4:149176200-149176400	Enhancers	Right Atrium	heart
23	chr4:149176200-149176400	Enhancers	Stomach Smooth Muscle	stomach

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