Variant report

Variant	rs4087963
Chromosome Location	chr4:149204791-149204792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11099689	0.85[EUR][1000 genomes]
rs11730274	0.85[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs11733930	0.89[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes]
rs11735947	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12512126	0.89[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs12640639	0.81[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12647354	0.92[ASN][1000 genomes]
rs13103641	0.93[ASN][1000 genomes]
rs13104051	0.93[ASN][1000 genomes]
rs13105361	0.86[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs13119790	0.90[ASN][1000 genomes]
rs13137095	0.94[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13138913	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13147775	0.89[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs13148853	0.89[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs1429914	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs17620775	0.92[ASN][1000 genomes]
rs17620822	0.86[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2356395	0.85[EUR][1000 genomes]
rs34279352	0.85[ASN][1000 genomes]
rs34636256	0.84[EUR][1000 genomes]
rs35111299	0.80[ASN][1000 genomes]
rs3846321	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs3887856	0.86[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs3910046	0.86[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4083100	0.91[ASN][1000 genomes]
rs66469272	0.90[ASN][1000 genomes]
rs67343083	0.84[ASN][1000 genomes]
rs6854097	0.83[EUR][1000 genomes]
rs765491	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149192400-149209400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:149194400-149216400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr4:149195200-149207600	Weak transcription	Brain Angular Gyrus	brain
4	chr4:149195800-149205000	Weak transcription	Gastric	stomach
5	chr4:149196800-149209600	Weak transcription	Pancreas	Pancrea
6	chr4:149199600-149209600	Weak transcription	Left Ventricle	heart
7	chr4:149202800-149206600	Enhancers	Fetal Heart	heart
8	chr4:149203200-149206000	Enhancers	Fetal Intestine Large	intestine
9	chr4:149203200-149206400	Enhancers	Right Ventricle	heart
10	chr4:149203600-149204800	Enhancers	Fetal Intestine Small	intestine
11	chr4:149203600-149205000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:149203600-149205400	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr4:149203600-149205600	Enhancers	Adipose Nuclei	Adipose
14	chr4:149203600-149206400	Enhancers	Fetal Lung	lung
15	chr4:149203600-149206400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr4:149203600-149207000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr4:149203800-149204800	Enhancers	Small Intestine	intestine
18	chr4:149203800-149205200	Enhancers	Stomach Mucosa	stomach
19	chr4:149203800-149205800	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr4:149203800-149206200	Enhancers	Colon Smooth Muscle	Colon
21	chr4:149204000-149208000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:149204000-149209600	Weak transcription	Aorta	Aorta
23	chr4:149204200-149204800	Enhancers	Brain Cingulate Gyrus	brain
24	chr4:149204200-149205200	Weak transcription	Psoas Muscle	Psoas
25	chr4:149204200-149205200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr4:149204200-149205200	Weak transcription	Right Atrium	heart
27	chr4:149204200-149206200	Enhancers	Duodenum Mucosa	Duodenum
28	chr4:149204200-149208400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:149204200-149209400	Weak transcription	Colonic Mucosa	Colon
30	chr4:149204400-149204800	Weak transcription	Ovary	ovary
31	chr4:149204400-149205200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr4:149204400-149205600	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:149204400-149206800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr4:149204400-149207400	Weak transcription	Brain Anterior Caudate	brain
35	chr4:149204600-149204800	Flanking Active TSS	Liver	Liver
36	chr4:149204600-149205000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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