Variant report

Variant	rs17620775
Chromosome Location	chr4:149186489-149186490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11730274	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11735947	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12640639	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12647354	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13103641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13104051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13105361	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13119790	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13137095	0.90[ASN][1000 genomes]
rs13138913	0.97[ASN][1000 genomes]
rs1429914	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17620822	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34279352	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35111299	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3846321	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3887856	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3910046	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4083100	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4087963	0.92[ASN][1000 genomes]
rs66469272	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67343083	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs765491	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149175600-149195000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149176400-149188400	Weak transcription	Right Atrium	heart
3	chr4:149177200-149194800	Weak transcription	Small Intestine	intestine
4	chr4:149180000-149194600	Weak transcription	Left Ventricle	heart
5	chr4:149181200-149194800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:149182600-149187600	Weak transcription	Gastric	stomach
7	chr4:149182600-149194800	Weak transcription	Esophagus	oesophagus
8	chr4:149183000-149189800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr4:149183000-149194800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:149184200-149187400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:149184600-149189600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:149184600-149194600	Weak transcription	Ovary	ovary
13	chr4:149185800-149187600	Weak transcription	Pancreas	Pancrea
14	chr4:149186000-149194800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:149186200-149186800	Enhancers	Fetal Kidney	kidney
16	chr4:149186200-149194800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr4:149186400-149188600	Enhancers	Fetal Intestine Large	intestine
18	chr4:149186400-149188600	Enhancers	Fetal Intestine Small	intestine

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