Variant report

Variant	rs13140394
Chromosome Location	chr4:76157473-76157474
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10000685	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1156790	0.83[ASN][1000 genomes]
rs13116043	1.00[ASN][1000 genomes]
rs13134069	1.00[ASN][1000 genomes]
rs1497203	1.00[ASN][1000 genomes]
rs1497204	1.00[ASN][1000 genomes]
rs1497208	1.00[ASN][1000 genomes]
rs1497212	1.00[ASN][1000 genomes]
rs1602928	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17000393	1.00[ASN][1000 genomes]
rs17000411	1.00[ASN][1000 genomes]
rs2055216	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2055217	0.83[ASN][1000 genomes]
rs2088369	1.00[ASN][1000 genomes]
rs2220800	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34469188	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35058733	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35515760	0.84[AMR][1000 genomes]
rs4859946	1.00[ASN][1000 genomes]
rs62315081	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62316905	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535036	1.00[ASN][1000 genomes]
rs6535233	1.00[ASN][1000 genomes]
rs6535235	1.00[ASN][1000 genomes]
rs67227453	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6835188	1.00[ASN][1000 genomes]
rs6839764	0.83[ASN][1000 genomes]
rs6842741	1.00[ASN][1000 genomes]
rs6844614	1.00[ASN][1000 genomes]
rs6853162	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6855222	0.83[ASN][1000 genomes]
rs7692686	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs904086	1.00[ASN][1000 genomes]
rs9996575	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1010552	chr4:76064415-76325430	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv1850883	chr4:76065572-76194403	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv594686	chr4:76139891-76212995	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv968038	chr4:76153468-76175173	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76154800-76158600	Enhancers	Colon Smooth Muscle	Colon
2	chr4:76155800-76160200	Weak transcription	GM12878-XiMat	blood
3	chr4:76156200-76157800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:76156200-76160600	Weak transcription	Fetal Intestine Large	intestine
5	chr4:76156600-76158000	Enhancers	Rectal Smooth Muscle	rectum
6	chr4:76157200-76157600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:76157400-76158400	Enhancers	Rectal Mucosa Donor 31	rectum

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