Variant report
| Variant | rs2055216 |
|---|---|
| Chromosome Location | chr4:76138121-76138122 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10000685 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1156790 | 0.83[ASN][1000 genomes] |
| rs13116043 | 1.00[ASN][1000 genomes] |
| rs13134069 | 1.00[ASN][1000 genomes] |
| rs13140394 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1497203 | 1.00[ASN][1000 genomes] |
| rs1497204 | 1.00[ASN][1000 genomes] |
| rs1497208 | 1.00[ASN][1000 genomes] |
| rs1497212 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1602928 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17000393 | 1.00[ASN][1000 genomes] |
| rs17000411 | 1.00[ASN][1000 genomes] |
| rs2055217 | 0.83[ASN][1000 genomes] |
| rs2088369 | 1.00[ASN][1000 genomes] |
| rs2220800 | 1.00[ASN][1000 genomes] |
| rs34469188 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35058733 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4859946 | 1.00[ASN][1000 genomes] |
| rs62315081 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62316905 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6535036 | 1.00[ASN][1000 genomes] |
| rs6535233 | 1.00[ASN][1000 genomes] |
| rs6535235 | 1.00[ASN][1000 genomes] |
| rs67227453 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6835188 | 1.00[ASN][1000 genomes] |
| rs6839764 | 0.83[ASN][1000 genomes] |
| rs6842741 | 1.00[ASN][1000 genomes] |
| rs6844614 | 1.00[ASN][1000 genomes] |
| rs6853162 | 1.00[ASN][1000 genomes] |
| rs6855222 | 0.83[ASN][1000 genomes] |
| rs7692686 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs904086 | 1.00[ASN][1000 genomes] |
| rs9996575 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1005324 | chr4:75689880-76233555 | Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv537142 | chr4:75689880-76233555 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1010552 | chr4:76064415-76325430 | Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | esv1850883 | chr4:76065572-76194403 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv879492 | chr4:76088845-76154064 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:76135400-76138200 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
