Variant report

Variant	rs904086
Chromosome Location	chr4:76093436-76093437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10000685	1.00[ASN][1000 genomes]
rs10021927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1156790	0.83[ASN][1000 genomes]
rs13116043	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13134069	1.00[ASN][1000 genomes]
rs13140394	1.00[ASN][1000 genomes]
rs1497203	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497204	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497208	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497212	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602928	1.00[ASN][1000 genomes]
rs17000393	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17000411	1.00[ASN][1000 genomes]
rs17000492	1.00[CHB][hapmap]
rs2055216	1.00[ASN][1000 genomes]
rs2055217	0.83[ASN][1000 genomes]
rs2088369	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220800	1.00[ASN][1000 genomes]
rs34469188	1.00[ASN][1000 genomes]
rs35058733	1.00[ASN][1000 genomes]
rs4859946	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62315081	1.00[ASN][1000 genomes]
rs62316905	1.00[ASN][1000 genomes]
rs6535036	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535233	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535235	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67227453	1.00[ASN][1000 genomes]
rs6835188	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839764	0.83[ASN][1000 genomes]
rs6842741	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844614	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853162	1.00[ASN][1000 genomes]
rs6855222	0.83[ASN][1000 genomes]
rs7692686	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9996575	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1004679	chr4:75997311-76095570	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1010552	chr4:76064415-76325430	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv1850883	chr4:76065572-76194403	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv879492	chr4:76088845-76154064	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76092600-76094200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:76092800-76095000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:76093200-76094000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:76093200-76094200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:76093200-76094200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:76093400-76093800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:76093400-76094400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:76093400-76097800	Weak transcription	Fetal Muscle Leg	muscle

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