Variant report

Variant	rs6842741
Chromosome Location	chr4:76106008-76106009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10000685	1.00[ASN][1000 genomes]
rs1156790	0.83[ASN][1000 genomes]
rs13116043	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13134069	1.00[ASN][1000 genomes]
rs13140394	1.00[ASN][1000 genomes]
rs1497203	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497204	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497208	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497212	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602928	1.00[ASN][1000 genomes]
rs17000393	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17000411	1.00[ASN][1000 genomes]
rs2055216	1.00[ASN][1000 genomes]
rs2055217	0.83[ASN][1000 genomes]
rs2088369	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220800	1.00[ASN][1000 genomes]
rs34469188	1.00[ASN][1000 genomes]
rs35058733	1.00[ASN][1000 genomes]
rs4859946	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62315081	1.00[ASN][1000 genomes]
rs62316905	1.00[ASN][1000 genomes]
rs6535036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535233	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535235	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67227453	1.00[ASN][1000 genomes]
rs6835188	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839764	0.83[ASN][1000 genomes]
rs6844614	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853162	1.00[ASN][1000 genomes]
rs6855222	0.83[ASN][1000 genomes]
rs7692686	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs904086	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996575	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1010552	chr4:76064415-76325430	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv1850883	chr4:76065572-76194403	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879492	chr4:76088845-76154064	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv966200	chr4:76105747-76114266	Active TSS Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76105600-76106200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:76105600-76106200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
3	chr4:76105600-76107000	Active TSS	Duodenum Mucosa	Duodenum
4	chr4:76105600-76107200	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr4:76105800-76106400	Flanking Active TSS	Placenta	Placenta
6	chr4:76105800-76106600	Enhancers	Stomach Mucosa	stomach
7	chr4:76105800-76106600	Active TSS	HepG2	liver
8	chr4:76105800-76106800	Active TSS	Colonic Mucosa	Colon
9	chr4:76105800-76107200	Enhancers	Dnd41	blood
10	chr4:76106000-76106200	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr4:76106000-76106200	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr4:76106000-76106200	Active TSS	Adipose Nuclei	Adipose
13	chr4:76106000-76106200	Enhancers	GM12878-XiMat	blood
14	chr4:76106000-76106200	Active TSS	Hela-S3	cervix
15	chr4:76106000-76106400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:76106000-76106400	Active TSS	Colon Smooth Muscle	Colon
17	chr4:76106000-76106400	Active TSS	Pancreas	Pancrea
18	chr4:76106000-76106400	Active TSS	Osteobl	bone
19	chr4:76106000-76106600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:76106000-76106600	Flanking Active TSS	Primary B cells from peripheral blood	blood
21	chr4:76106000-76106600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:76106000-76106800	Active TSS	Rectal Smooth Muscle	rectum
23	chr4:76106000-76107000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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