Variant report

Variant	rs13148020
Chromosome Location	chr4:107423164-107423165
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13148463	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1522207	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2049209	0.87[EUR][1000 genomes]
rs2691803	0.88[EUR][1000 genomes]
rs3108142	0.92[CEU][hapmap]
rs4413480	0.85[ASN][1000 genomes]
rs4484374	0.89[EUR][1000 genomes]
rs4495119	0.88[EUR][1000 genomes]
rs6825451	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7691063	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107415200-107450200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:107417600-107423200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:107419200-107423400	Weak transcription	Osteobl	bone
4	chr4:107422800-107423400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:107422800-107424000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:107423000-107423800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:107423000-107423800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:107423000-107423800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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