Variant report

Variant	rs13164357
Chromosome Location	chr5:107053199-107053200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr5:107053192-107053871	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000249959	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12153436	0.83[ASN][1000 genomes]
rs12652503	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12657057	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13159331	0.84[AMR][1000 genomes]
rs13160470	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161115	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13161130	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13161433	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13165345	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167862	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13170512	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13178107	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13179374	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1572255	0.80[AMR][1000 genomes]
rs17351315	0.80[AMR][1000 genomes]
rs2080938	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2080942	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194207	0.93[EUR][1000 genomes]
rs34685651	0.80[AMR][1000 genomes]
rs35627284	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36044695	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56159505	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56215442	0.80[AMR][1000 genomes]
rs56233000	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62357892	0.80[AMR][1000 genomes]
rs62357900	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7707690	0.80[AMR][1000 genomes]
rs7709385	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7736022	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs933066	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107053000-107071800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links