Variant report

Variant	rs35627284
Chromosome Location	chr5:107044561-107044562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10055714	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10076353	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11242644	0.82[AMR][1000 genomes]
rs12652503	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12657057	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12657154	0.84[AMR][1000 genomes]
rs13159331	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13160470	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13161115	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13161130	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161433	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13164357	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13165345	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13167862	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13170512	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178107	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13179374	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13184509	0.84[AMR][1000 genomes]
rs1572255	0.86[AMR][1000 genomes]
rs17351315	0.86[AMR][1000 genomes]
rs2080938	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2080942	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2194207	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34685651	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs36044695	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4957707	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56159505	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56215442	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56233000	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357892	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62357896	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62357900	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705512	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7707690	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7709385	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7721633	0.82[AMR][1000 genomes]
rs7723130	0.84[AMR][1000 genomes]
rs7732784	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7736022	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs897413	0.82[AMR][1000 genomes]
rs933066	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3362504	chr5:107044478-107047026	Weak transcription ZNF genes & repeats	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107032400-107049000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:107041600-107045000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107041600-107049000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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